Fix_website (#295)

* update openproblems submodule * add redirect * add entries to renvignore * fix minor issues in qmds * update changelog * update changelog
openproblems-bio · Oct 24, 2023 · 23c8efb · 23c8efb
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diff --git a/.renvignore b/.renvignore
@@ -0,0 +1,5 @@
+_freeze
+_openproblems-v2
+_site
+.quarto
+
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,13 @@
+# openproblems.bio unreleased
+
+## BUG FIXES
+
+* Updated the `openproblems-v2` submodule (PR #295). This fixes a deprecation error due to an update in ruamel.yaml.
+
+* Add redirect from `/benchmark_dataset` to `/events/2021-09_neurips/documentation/data/dataset.html` (#292, PR #295).
+
+* Fixed minor issues in qmd files (PR #295).
+
 # openproblems.bio v2.3.5
 
 ## MINOR CHANGES

diff --git a/_openproblems-v2 b/_openproblems-v2
diff --git a/_redirects b/_redirects
@@ -7,4 +7,5 @@
 /competitions/neurips_2021 /events/2021-09_neurips
 /competitions/neurips_2022 /events/2022-08_neurips
 /competitions/neurips_2021_docs/* /events/2021-09_neurips/documentation/:splat
-/jamboree /events/2021-03_jamboree
+/jamboree /events/2021-03_jamboree
+/benchmark_dataset /events/2021-09_neurips/documentation/data/dataset.html
diff --git a/documentation/create_component/_include/_add_dependencies.qmd b/documentation/create_component/_include/_add_dependencies.qmd
@@ -10,7 +10,7 @@ If you're using a custom image use the following minimum setup:
 
 ::: {.panel-tabset}
 ## Python
-```{yaml}
+```yaml
 platforms:
   - type: docker
     Image: your custom image
@@ -29,7 +29,7 @@ platforms:
 
 ## R
 
-```{yaml}
+```yaml
 platforms:
   - type: docker
     Image: your custom image

diff --git a/results/_include/_dataset_descriptions.qmd b/results/_include/_dataset_descriptions.qmd
@@ -10,5 +10,5 @@ lines <- pmap_chr(dataset_info, function(dataset_name, dataset_summary, data_ref
   summ <- (dataset_summary %|% "Missing 'dataset_summary'") %>% str_replace_all("\\. *$", "")
   glue::glue("* **{dataset_name}**{ref}: {summ}.")
 })
-knitr::asis_output(lines)
+knitr::asis_output(paste(lines, collapse = "\n"))
 ```
diff --git a/results/_include/_method_descriptions.qmd b/results/_include/_method_descriptions.qmd
@@ -22,6 +22,6 @@ lines <- pmap_chr(method_info, function(method_name, method_summary, paper_refer
   summ <- (method_summary %|% "Missing 'method_summary'") %>% str_replace_all("\\. *$", "")
   glue::glue("* **{method_name}**{ref}: {summ}.{version_label}{links_label}")
 })
-knitr::asis_output(lines)
+knitr::asis_output(paste(lines, collapse = "\n"))
 ```
 
diff --git a/results/_include/_metric_descriptions.qmd b/results/_include/_metric_descriptions.qmd
@@ -10,5 +10,5 @@ lines <- pmap_chr(metric_info, function(metric_name, metric_summary, paper_refer
   summ <- (metric_summary %|% "Missing 'metric_summary'") %>% str_replace_all("\\. *$", "")
   glue::glue("* **{metric_name}**{ref}: {summ}.")
 })
-knitr::asis_output(lines)
+knitr::asis_output(paste(lines, collapse = "\n"))
 ```
+1 −1		_viash.yaml
+1 −1		src/common/create_component/config.vsh.yaml
+10 −0		src/common/create_component/script.py