Add metric info

openproblems-bio · Nov 13, 2024 · 81a47ec · 81a47ec
1 parent c63659e
commit 81a47ec
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Showing 3 changed files with 21 additions and 7 deletions.
diff --git a/results/_include/_method_descriptions.qmd b/results/_include/_method_descriptions.qmd
@@ -31,7 +31,6 @@ lines <- pmap_chr(method_info %>% filter(!is_baseline), function(method_name, me
     "bi bi-tag", paste0(code_version),
     )
   
-
   meta_list <- paste(
       paste0("<i class=\"", method_meta$icon, "\"></i> ", method_meta$value),
       collapse = " · "

diff --git a/results/_include/_metric_descriptions.qmd b/results/_include/_metric_descriptions.qmd
@@ -1,12 +1,27 @@
 ```{r}
 #| echo: false
-lines <- pmap_chr(metric_info, function(metric_name, metric_summary, metric_description, paper_reference, ...) {
+lines <- pmap_chr(metric_info, function(metric_name, metric_summary, metric_description, paper_reference, implementation_url, code_version, image, ...) {
   ref <- split_cite_fun(paper_reference)
   if (ref != "") ref <- paste0(" ", ref)
   summ <- (metric_summary %|% "Missing 'metric_summary'") %>% str_replace_all("\\n", " ") %>% str_replace_all("\\. *$", "")
+
+  metric_meta <- tribble(
+    ~icon, ~value,
+    "bi bi-file-earmark-code", paste0("[implementation](", implementation_url, ")"),
+    "bi bi-box-seam", paste0("[container](", image, ")"),
+    "bi bi-tag", paste0(code_version),
+    )
+  
+  meta_list <- paste(
+      paste0("<i class=\"", metric_meta$icon, "\"></i> ", metric_meta$value),
+      collapse = " · "
+    )
+
   strip_margin(glue::glue("
   |### {metric_name}
   |
+  |{meta_list}
+  |
   |{summ}{ref}.
   |
   |{metric_description %|% ''}

diff --git a/results/perturbation_prediction/data/metric_info.json b/results/perturbation_prediction/data/metric_info.json
@@ -10,7 +10,7 @@
     },
     "implementation_url": "https://github.com/openproblems-bio/task_perturbation_prediction/blob/2fa44462b1e7d530bad703c4a20ed22b49d3705e/src/metrics/mean_rowwise_error",
     "image": "ghcr.io/openproblems-bio/task_perturbation_prediction/metrics/mean_rowwise_error:build_main",
-    "code_version": null,
+    "code_version": "build_main",
     "commit_sha": "2fa44462b1e7d530bad703c4a20ed22b49d3705e",
     "maximize": false
   },
@@ -25,7 +25,7 @@
     },
     "implementation_url": "https://github.com/openproblems-bio/task_perturbation_prediction/blob/2fa44462b1e7d530bad703c4a20ed22b49d3705e/src/metrics/mean_rowwise_error",
     "image": "ghcr.io/openproblems-bio/task_perturbation_prediction/metrics/mean_rowwise_error:build_main",
-    "code_version": null,
+    "code_version": "build_main",
     "commit_sha": "2fa44462b1e7d530bad703c4a20ed22b49d3705e",
     "maximize": false
   },
@@ -40,7 +40,7 @@
     },
     "implementation_url": "https://github.com/openproblems-bio/task_perturbation_prediction/blob/2fa44462b1e7d530bad703c4a20ed22b49d3705e/src/metrics/mean_rowwise_correlation",
     "image": "ghcr.io/openproblems-bio/task_perturbation_prediction/metrics/mean_rowwise_correlation:build_main",
-    "code_version": null,
+    "code_version": "build_main",
     "commit_sha": "2fa44462b1e7d530bad703c4a20ed22b49d3705e",
     "maximize": true
   },
@@ -55,7 +55,7 @@
     },
     "implementation_url": "https://github.com/openproblems-bio/task_perturbation_prediction/blob/2fa44462b1e7d530bad703c4a20ed22b49d3705e/src/metrics/mean_rowwise_correlation",
     "image": "ghcr.io/openproblems-bio/task_perturbation_prediction/metrics/mean_rowwise_correlation:build_main",
-    "code_version": null,
+    "code_version": "build_main",
     "commit_sha": "2fa44462b1e7d530bad703c4a20ed22b49d3705e",
     "maximize": true
   },
@@ -70,7 +70,7 @@
     },
     "implementation_url": "https://github.com/openproblems-bio/task_perturbation_prediction/blob/2fa44462b1e7d530bad703c4a20ed22b49d3705e/src/metrics/mean_rowwise_correlation",
     "image": "ghcr.io/openproblems-bio/task_perturbation_prediction/metrics/mean_rowwise_correlation:build_main",
-    "code_version": null,
+    "code_version": "build_main",
     "commit_sha": "2fa44462b1e7d530bad703c4a20ed22b49d3705e",
     "maximize": true
   }