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@@ -1,6 +1,6 @@ | ||
[ | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "control_methods", | ||
"method_id": "pearson_corr", | ||
"method_name": "pearson_corr", | ||
"method_summary": "Baseline based on correlation", | ||
|
@@ -10,13 +10,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/pearson_corr:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/pearson_corr", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/pearson_corr:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/pearson_corr", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "control_methods", | ||
"method_id": "negative_control", | ||
"method_name": "Negative control", | ||
"method_summary": "Source-target links based on random assignment", | ||
|
@@ -26,13 +26,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/negative_control:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/negative_control", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/negative_control:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/negative_control", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "control_methods", | ||
"method_id": "positive_control", | ||
"method_name": "positive_control", | ||
"method_summary": "Baseline based on correlation", | ||
|
@@ -42,13 +42,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/positive_control:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/positive_control", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/control_methods/positive_control:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/control_methods/positive_control", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "portia", | ||
"method_name": "portia", | ||
"method_summary": "GRN inference using PORTIA", | ||
|
@@ -58,13 +58,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/portia:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/portia", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/portia:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/portia", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "ppcor", | ||
"method_name": "ppcor", | ||
"method_summary": "GRN inference using PPCOR", | ||
|
@@ -74,13 +74,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/ppcor:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/ppcor", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/ppcor:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/ppcor", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "scenic", | ||
"method_name": "scenic", | ||
"method_summary": "GRN inference using scenic", | ||
|
@@ -90,13 +90,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/scenic:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/scenic", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/scenic:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/scenic", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "scenicplus", | ||
"method_name": "scenicplus", | ||
"method_summary": "GRN inference using scenicplus", | ||
|
@@ -106,13 +106,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/scenicplus:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/scenicplus", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/scenicplus:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/scenicplus", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "scprint", | ||
"method_name": "scprint", | ||
"method_summary": "GRN inference using scPRINT", | ||
|
@@ -122,13 +122,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/scprint:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/scprint", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/scprint:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/scprint", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "grnboost2", | ||
"method_name": "grnboost2", | ||
"method_summary": "GRN inference using GRNBoost2", | ||
|
@@ -138,13 +138,13 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/grnboost2:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/grnboost2", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/single_omics/grnboost2:dev", | ||
"implementation_url": "git@github.com:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/single_omics/grnboost2", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_inference", | ||
"task_id": "grn_methods", | ||
"method_id": "scglue", | ||
"method_name": "scglue", | ||
"method_summary": "GRN inference using scglue", | ||
|
@@ -154,9 +154,57 @@ | |
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/scglue:build_main", | ||
"implementation_url": "https://github.com/openproblems-bio/task_grn_inference/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/scglue", | ||
"code_version": "build_main", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/scglue:dev", | ||
"implementation_url": "[email protected]:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/scglue", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_methods", | ||
"method_id": "granie", | ||
"method_name": "granie", | ||
"method_summary": "GRN inference using GRaNIE", | ||
"method_description": "GRN inference using GRaNIE\n", | ||
"is_baseline": false, | ||
"references_doi": null, | ||
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/granie:dev", | ||
"implementation_url": "[email protected]:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/granie", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_methods", | ||
"method_id": "figr", | ||
"method_name": "figr", | ||
"method_summary": "GRN inference using figr", | ||
"method_description": "GRN inference using figr.\n", | ||
"is_baseline": false, | ||
"references_doi": null, | ||
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": null, | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/figr:dev", | ||
"implementation_url": "[email protected]:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/figr", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
}, | ||
{ | ||
"task_id": "grn_methods", | ||
"method_id": "celloracle", | ||
"method_name": "celloracle", | ||
"method_summary": "GRN inference using celloracle", | ||
"method_description": "GRN inference using celloracle.\n", | ||
"is_baseline": false, | ||
"references_doi": null, | ||
"references_bibtex": null, | ||
"code_url": "https://github.com/openproblems-bio/task_grn_inference", | ||
"documentation_url": "https://morris-lab.github.io/CellOracle.documentation/", | ||
"image": "https://ghcr.io/openproblems-bio/task_grn_inference/methods/multi_omics/celloracle:dev", | ||
"implementation_url": "[email protected]:openproblems-bio/task_grn_inference.git/blob/40e4051728e992753049c0e15af22a99b8e9c592/src/methods/multi_omics/celloracle", | ||
"code_version": "dev", | ||
"commit_sha": "40e4051728e992753049c0e15af22a99b8e9c592" | ||
} | ||
] |
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