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feat: FoldX predicted energies in variant annotation #947

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@DSuveges DSuveges commented Dec 13, 2024

Context

OTAR2081 mapped the mutational landscape of the full human proteome by systematically changing every amio-acid to all other amino acid in the AlphaFold structures of all human protein. The mutation effect is assessed by the comparing energies of the structures via FoldX. The raw and scaled ddG values are used as inSilicoPredictors for all variants in the variant index that causes the same amio-acid change in the given protein.

The PR contains

  • Logic and step to process the FoldX dataset generated by OTAR2081.
  • Logic to integrate amino-acid base in-silico predictors into the the variant index.

@github-actions github-actions bot added the Step label Dec 16, 2024
@DSuveges DSuveges marked this pull request as ready for review December 16, 2024 13:10
@DSuveges DSuveges requested a review from d0choa December 16, 2024 14:35
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Enable gentropy to enrich variant in-silico predictors with amino-acid variation consequences (OTAR2081)
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