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Fix config file
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cmalangone committed Nov 24, 2020
1 parent e3070a9 commit 00e3c24
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -108,8 +108,8 @@ efo:
resource: disease-phenotype
owl_jq: '.["@graph"][]'
efo_downloads:
- uri: https://github.com/EBISPOT/efo/releases/download/v3.23.0/efo_otar_slim.owl
output_filename: efo_otar_slim_v3.23.0.owl
- uri: https://github.com/EBISPOT/efo/releases/download/v3.24.0/efo_otar_slim.owl
output_filename: efo_otar_slim_v3.24.0.owl
resource: ontology-efo
owl_jq: '.["@graph"][] | select (.["@type"] == "Class" and ."@id" != null)|.subClassOf=([.subClassOf]|flatten|del(.[]|nulls))|.hasExactSynonym=([.hasExactSynonym]|flatten|del(.[]|nulls))|.hasDbXref=([.hasDbXref]|flatten|del(.[]|nulls))|.inSubset=([.inSubset]|flatten|del(.[]|nulls))|.hasAlternativeId=([.hasAlternativeId]|flatten|del(.[]|nulls))|@json'
- uri: https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/v2020-10-12/hp.owl
Expand Down Expand Up @@ -268,7 +268,7 @@ interactions:
string_info:
uri: https://stringdb-static.org/download/protein.links.detailed.v11.0/9606.protein.links.detailed.v11.0.txt.gz
output_string: string-interactions-{suffix}.json.gz
score_threshold: 800
score_threshold: 0
score_limit:
additional_resouces:
ensembl_ftp:
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