Testing #5

	name: unit test
	on: [push, pull_request]

	defaults:
	run:
	# This is needed for miniconda, see:
	# https://github.com/marketplace/actions/setup-miniconda#important.
	shell: bash -l {0}

	jobs:
	miniwdl_check:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	- name: Install miniwdl
	run: \|
	python -m pip install --upgrade pip
	pip3 install miniwdl
	pip3 install pytest-workflow
	mkdir ~/temp
	- name: Run unit tests
	# Use --symlink to limit disk usage.
	run: >-
	pytest --keep-workflow-wd-on-fail --git-aware
	--symlink tests/ --basetemp ~/temp
	- name: Check files
	run: ls -ltr ~/temp/*
	- name: Check miniwdl log in case of failure.
	if: ${{ failure() }}
	# Get the last 1000 lines of the miniwdl log to catch the error.
	run: bash -c 'tail -n 1000 ~/temp/pytest_workflow_//log.out'
	- name: Check job stderr messages in case of failure
	if: ${{ failure() }}
	run: >-
	bash -c '
	for file in $(find ~/temp -name stderr);
	do echo $file; cat $file; done'
	- name: Check job stdout messages in case of failure
	if: ${{ failure() }}
	run: >-
	bash -c '
	for file in $(find ~/temp -name stdout);
	do echo $file; cat $file; done'

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