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Update test.example.yaml #47

Update test.example.yaml

Update test.example.yaml #47

Workflow file for this run

name: unit test
on: [push, pull_request]
defaults:
run:
# This is needed for miniconda, see:
# https://github.com/marketplace/actions/setup-miniconda#important.
shell: bash -l {0}
jobs:
miniwdl_check:
runs-on: ubuntu-latest
strategy:
matrix:
test:
- test-hello
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install miniwdl
run: |
python -m pip install --upgrade pip
pip3 install miniwdl
pip3 install pytest-workflow
mkdir ~/temp
- name: Run unit tests
# Use --symlink to limit disk usage.
run: >-
pytest --keep-workflow-wd-on-fail --git-aware --tag ${{ matrix.test }}
--symlink tests/ --basetemp ~/temp
- name: Check miniwdl log in case of failure.
if: ${{ failure() }}
# Get the last 1000 lines of the miniwdl log to catch the error.
run: bash -c 'tail -n 1000 /home/runner/temp/*/task.out'
- name: Check job stderr messages in case of failure
if: ${{ failure() }}
run: >-
bash -c '
for file in $(find /home/runner/temp/ -name stderr.txt);
do echo $file; cat $file; done'
- name: Check job stdout messages in case of failure
if: ${{ failure() }}
run: >-
bash -c '
for file in $(find /home/runner/temp/ -name stdout.txt);
do echo $file; cat $file; done'