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@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.7k 212

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 25 35

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 210 50

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 110 22

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 2

Repositories

Showing 10 of 101 repositories
  • NicolettiEtAl2019_NeuronModels Public Forked from ModelDBRepository/267187

    Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

    openworm/NicolettiEtAl2019_NeuronModels’s past year of commit activity
    Python 0 2 1 0 Updated Dec 12, 2024
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion’s past year of commit activity
    C++ 1 3 7 0 Updated Dec 10, 2024
  • c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    openworm/c302’s past year of commit activity
    Python 110 22 16 (1 issue needs help) 2 Updated Dec 6, 2024
  • ConnectomeToolbox Public

    Information on published connectomics data related to C. elegans

    openworm/ConnectomeToolbox’s past year of commit activity
    Python 1 4 2 0 Updated Dec 4, 2024
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    openworm/NicolettiEtAl2024_MN_IN’s past year of commit activity
    Python 0 2 0 0 Updated Dec 3, 2024
  • geppetto-client Public

    The web client of a Geppetto application

    openworm/geppetto-client’s past year of commit activity
    JavaScript 5 2 70 29 Updated Dec 2, 2024
  • hodgkin_huxley_tutorial Public

    A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

    openworm/hodgkin_huxley_tutorial’s past year of commit activity
    Python 40 LGPL-3.0 9 5 0 Updated Nov 5, 2024
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    openworm/OpenWorm’s past year of commit activity
    Python 2,696 MIT 212 41 5 Updated Oct 28, 2024
  • org.geppetto.frontend Public

    Geppetto Java frontend bundle

    openworm/org.geppetto.frontend’s past year of commit activity
    Java 29 25 2 4 Updated Oct 27, 2024
  • sibernetic Public

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    openworm/sibernetic’s past year of commit activity
    C 362 105 30 7 Updated Oct 9, 2024
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