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Update WormSim recordings #133

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gidili opened this issue May 19, 2016 · 2 comments
Open
2 tasks

Update WormSim recordings #133

gidili opened this issue May 19, 2016 · 2 comments
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@gidili
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gidili commented May 19, 2016

Update the HDF5 to be compatible with the latest version of Geppetto for:

  • wormsim mechanical
  • c302

Example of what may have changed (the "aspect" is gone):

Entries like C302.muscle[0].mechanical.x will now be c302.muscle[0].x

The wormsim mechanical recording is generated from the python recordings generator. Sample usage in the tests.

The c302 recording is generated simply by running a simulation as specified in the c302 project, and the new recording will be generated automatically.

The HDF viewer can be used to inspect the new recordings.

@gidili gidili added the wormsim label May 19, 2016
@gidili gidili added this to the Midterm milestone May 19, 2016
@gidili gidili changed the title Update WormSim recordings Update WormSim recordings May 19, 2016
@gidili gidili added the ready label May 19, 2016
@tarelli tarelli assigned ghost May 24, 2016
@ghost ghost added in progress and removed ready labels May 24, 2016
@gidili
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gidili commented May 24, 2016

@PetePy @tarelli another thing that changed in Geppetto is that there are no longer SimulationTree and VisualizationTree, so not only the "aspect" (what used to be "mechanical") needs to be dropped from the path but also the tree. See for example on the wormsim recording this line (and a few lines below the same).

@tarelli
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tarelli commented May 26, 2016

@PetePy for c302 it should be possible to just reuse the project/recording in Geppetto https://github.com/openworm/org.geppetto.core/tree/master/src/main/resources/projects/C302. We'll need to update the neuroml adding the bit about the backers (do a diff between the nml in wormsim and the one in geppetto and you'll know what I mean).

@tarelli tarelli modified the milestones: Spring 74, Midterm Jun 7, 2016
@tarelli tarelli unassigned ghost Jun 20, 2016
@tarelli tarelli removed this from the Spring 74 milestone Sep 14, 2016
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