chore: refactor provenance level 3 check into analysis

docs/source/pages/cli_usage/command_analyze.rst

@@ -80,6 +80,11 @@ Options
 
     The path to the local .m2 directory. If this option is not used, Macaron will use the default location at $HOME/.m2
 
+.. option:: --verify-provenance
+
+    Allow the analysis to attempt to verify provenance files as part of its normal operations.
+
+
 -----------
 Environment
 -----------

docs/source/pages/developers_guide/apidoc/macaron.provenance.rst

@@ -0,0 +1,34 @@
+macaron.provenance package
+==========================
+
+.. automodule:: macaron.provenance
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Submodules
+----------
+
+macaron.provenance.provenance\_extractor module
+-----------------------------------------------
+
+.. automodule:: macaron.provenance.provenance_extractor
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+macaron.provenance.provenance\_finder module
+--------------------------------------------
+
+.. automodule:: macaron.provenance.provenance_finder
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+macaron.provenance.provenance\_verifier module
+----------------------------------------------
+
+.. automodule:: macaron.provenance.provenance_verifier
+   :members:
+   :undoc-members:
+   :show-inheritance:

docs/source/pages/developers_guide/apidoc/macaron.repo_finder.rst

@@ -17,22 +17,6 @@ macaron.repo\_finder.commit\_finder module
    :undoc-members:
    :show-inheritance:
 
-macaron.repo\_finder.provenance\_extractor module
--------------------------------------------------
-
-.. automodule:: macaron.repo_finder.provenance_extractor
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
-macaron.repo\_finder.provenance\_finder module
-----------------------------------------------
-
-.. automodule:: macaron.repo_finder.provenance_finder
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
 macaron.repo\_finder.repo\_finder module
 ----------------------------------------
 

docs/source/pages/developers_guide/apidoc/macaron.rst

@@ -20,6 +20,7 @@ Subpackages
    macaron.output_reporter
    macaron.parsers
    macaron.policy_engine
+   macaron.provenance
    macaron.repo_finder
    macaron.repo_verifier
    macaron.slsa_analyzer

docs/source/pages/developers_guide/apidoc/macaron.slsa_analyzer.checks.rst

@@ -89,14 +89,6 @@ macaron.slsa\_analyzer.checks.provenance\_commit\_check module
    :undoc-members:
    :show-inheritance:
 
-macaron.slsa\_analyzer.checks.provenance\_l3\_check module
-----------------------------------------------------------
-
-.. automodule:: macaron.slsa_analyzer.checks.provenance_l3_check
-   :members:
-   :undoc-members:
-   :show-inheritance:
-
 macaron.slsa\_analyzer.checks.provenance\_l3\_content\_check module
 -------------------------------------------------------------------
 

docs/source/pages/tutorials/npm_provenance.rst

@@ -42,7 +42,7 @@ To perform an analysis on the latest version of semver (when this tutorial was w
 
 .. code-block:: shell
 
-    ./run_macaron.sh analyze -purl pkg:npm/[email protected]
+    ./run_macaron.sh analyze -purl pkg:npm/[email protected] --verify-provenance
 
 The analysis involves Macaron downloading the contents of the target repository to the configured, or default, ``output`` folder. Results from the analysis, including checks, are stored in the database found at ``output/macaron.db``  (See :ref:`Output Files Guide <output_files_guide>`). Once the analysis is complete, Macaron will also produce a report in the form of a HTML file.
 
@@ -52,7 +52,7 @@ During this analysis, Macaron will retrieve two provenance files from the npm re
 
 .. note:: Most of the details from the two provenance files can be found through the links provided on the artifacts page on the npm website. In particular: `Sigstore Rekor <https://search.sigstore.dev/?logIndex=92391688>`_. The provenance file itself can be found at: `npm registry <https://registry.npmjs.org/-/npm/v1/attestations/[email protected]>`_.
 
-Of course to reliably say the above does what is claimed here, proof is needed. For this we can rely on the check results produced from the analysis run. In particular, we want to know the results of three checks: ``mcn_provenance_derived_repo_1``, ``mcn_provenance_derived_commit_1``, and ``mcn_provenance_verified_1``. The first two to ensure that the commit and the repository being analyzed match those found in the provenance file, and the last check to ensure that the provenance file has been verified.
+Of course to reliably say the above does what is claimed here, proof is needed. For this we can rely on the check results produced from the analysis run. In particular, we want to know the results of three checks: ``mcn_provenance_derived_repo_1``, ``mcn_provenance_derived_commit_1``, and ``mcn_provenance_verified_1``. The first two to ensure that the commit and the repository being analyzed match those found in the provenance file, and the last check to ensure that the provenance file has been verified. For the third check to succeed, you need to enable provenance verification in Macaron by using the ``--verify-provenance`` command-line argument, as demonstrated above. This verification is disabled by default because it can be slow in some cases due to I/O-bound operations.
 
 .. _fig_semver_7.6.2_report:
 

src/macaron/__main__.py

@@ -1,4 +1,4 @@
-# Copyright (c) 2022 - 2024, Oracle and/or its affiliates. All rights reserved.
+# Copyright (c) 2022 - 2025, Oracle and/or its affiliates. All rights reserved.
 # Licensed under the Universal Permissive License v 1.0 as shown at https://oss.oracle.com/licenses/upl/.
 
 """This is the main entrypoint to run Macaron."""
@@ -32,7 +32,6 @@
 
 def analyze_slsa_levels_single(analyzer_single_args: argparse.Namespace) -> None:
     """Run the SLSA checks against a single target repository."""
-    deps_depth = None
     if analyzer_single_args.deps_depth == "inf":
         deps_depth = -1
     else:
@@ -173,7 +172,8 @@ def analyze_slsa_levels_single(analyzer_single_args: argparse.Namespace) -> None
         analyzer_single_args.sbom_path,
         deps_depth,
         provenance_payload=prov_payload,
-        validate_malware_switch=analyzer_single_args.validate_malware_switch,
+        validate_malware=analyzer_single_args.validate_malware,
+        verify_provenance=analyzer_single_args.verify_provenance,
     )
     sys.exit(status_code)
 
@@ -360,7 +360,7 @@ def main(argv: list[str] | None = None) -> None:
         help="The directory where Macaron looks for already cloned repositories.",
     )
 
-    # Add sub parsers for each action
+    # Add sub parsers for each action.
     sub_parser = main_parser.add_subparsers(dest="action", help="Run macaron <action> --help for help")
 
     # Use Macaron to analyze one single repository.
@@ -470,12 +470,19 @@ def main(argv: list[str] | None = None) -> None:
     )
 
     single_analyze_parser.add_argument(
-        "--validate-malware-switch",
+        "--validate-malware",
         required=False,
         action="store_true",
         help=("Enable malware validation."),
     )
 
+    single_analyze_parser.add_argument(
+        "--verify-provenance",
+        required=False,
+        action="store_true",
+        help=("Allow the analysis to attempt to verify provenance files as part of its normal operations."),
+    )
+
     # Dump the default values.
     sub_parser.add_parser(name="dump-defaults", description="Dumps the defaults.ini file to the output directory.")
 

src/macaron/config/defaults.ini

@@ -46,11 +46,6 @@ validate = True
 # The CycloneDX schema version used for validation.
 schema = 1.6
 
-# This is the Analyzer section used as part of Macaron's analysis.
-[analyzer]
-# This enables or disables attempts at verification of provenance.
-verify_provenance = True
-
 # This is the repo finder script.
 [repofinder]
 find_repos = True
@@ -569,7 +564,7 @@ purl_endpoint = v3alpha/purl
 # [analysis.checks]
 # exclude =
 #     mcn_build_as_code_1
-#     mcn_provenance_level_three_1
+#     mcn_provenance_verified_1
 # include = *
 # ```
 # 3. Exclude multiple checks that start with `mcn_provenance`:

src/macaron/database/db_custom_types.py

@@ -1,13 +1,21 @@
-# Copyright (c) 2023 - 2024, Oracle and/or its affiliates. All rights reserved.
+# Copyright (c) 2023 - 2025, Oracle and/or its affiliates. All rights reserved.
 # Licensed under the Universal Permissive License v 1.0 as shown at https://oss.oracle.com/licenses/upl/.
 
-"""This module implements SQLAlchemy type for converting date format to RFC3339 string representation."""
+"""This module implements SQLAlchemy types for Python data types that cannot be automatically stored."""
 
 import datetime
+import json
 from typing import Any
 
 from sqlalchemy import JSON, String, TypeDecorator
 
+from macaron.slsa_analyzer.provenance.intoto import (
+    InTotoPayload,
+    InTotoV01Payload,
+    InTotoV1Payload,
+    validate_intoto_payload,
+)
+
 
 class RFC3339DateTime(TypeDecorator):  # pylint: disable=W0223
     """
@@ -36,7 +44,7 @@ def process_bind_param(self, value: None | Any, dialect: Any) -> None | str:
         if the provided ``datetime`` is a naive ``datetime`` object then UTC is added.
 
         value: None | datetime.datetime
-            The value being stored
+            The value being stored.
         """
         if value is None:
             return None
@@ -52,7 +60,7 @@ def process_result_value(self, value: None | str, dialect: Any) -> None | dateti
         If the deserialized ``datetime`` has a timezone then return it, otherwise add UTC as its timezone.
 
         value: None | str
-            The value being loaded
+            The value being loaded.
         """
         if value is None:
             return None
@@ -76,7 +84,7 @@ def process_bind_param(self, value: None | dict, dialect: Any) -> None | dict:
         """Process when storing a dict object to the SQLite db.
 
         value: None | dict
-            The value being stored
+            The value being stored.
         """
         if not isinstance(value, dict):
             raise TypeError("DBJsonDict type expects a dict.")
@@ -87,8 +95,63 @@ def process_result_value(self, value: None | dict, dialect: Any) -> None | dict:
         """Process when loading a dict object from the SQLite db.
 
         value: None | dict
-            The value being loaded
+            The value being loaded.
         """
         if not isinstance(value, dict):
             raise TypeError("DBJsonDict type expects a dict.")
         return value
+
+
+class ProvenancePayload(TypeDecorator):  # pylint: disable=W0223
+    """SQLAlchemy column type to serialize InTotoProvenance."""
+
+    # It is stored in the database as a String value.
+    impl = String
+
+    # To prevent Sphinx from rendering the docstrings for `cache_ok`, make this docstring private.
+    #: :meta private:
+    cache_ok = True
+
+    def process_bind_param(self, value: InTotoPayload | None, dialect: Any) -> str | None:
+        """Process when storing an InTotoPayload object to the SQLite db.
+
+        value: InTotoPayload | None
+            The value being stored.
+        """
+        if value is None:
+            return None
+
+        if not isinstance(value, InTotoPayload):
+            raise TypeError("ProvenancePayload type expects an InTotoPayload.")
+
+        payload_type = value.__class__.__name__
+        payload_dict = {"payload_type": payload_type, "payload": value.statement}
+        return json.dumps(payload_dict)
+
+    def process_result_value(self, value: str | None, dialect: Any) -> InTotoPayload | None:
+        """Process when loading an InTotoPayload object from the SQLite db.
+
+        value: str | None
+            The value being loaded.
+        """
+        if value is None:
+            return None
+
+        try:
+            payload_dict = json.loads(value)
+        except ValueError as error:
+            raise TypeError(f"Error parsing str as JSON: {error}") from error
+
+        if not isinstance(payload_dict, dict):
+            raise TypeError("Parsed data is not a dict.")
+
+        if "payload_type" not in payload_dict or "payload" not in payload_dict:
+            raise TypeError("Missing keys in dict for ProvenancePayload type.")
+
+        payload = payload_dict["payload"]
+        if payload_dict["payload_type"] == "InTotoV01Payload":
+            return InTotoV01Payload(statement=payload)
+        if payload_dict["payload_type"] == "InTotoV1Payload":
+            return InTotoV1Payload(statement=payload)
+
+        return validate_intoto_payload(payload)

src/macaron/database/table_definitions.py

@@ -34,7 +34,7 @@
 
 from macaron.artifact.maven import MavenSubjectPURLMatcher
 from macaron.database.database_manager import ORMBase
-from macaron.database.db_custom_types import RFC3339DateTime
+from macaron.database.db_custom_types import ProvenancePayload, RFC3339DateTime
 from macaron.errors import InvalidPURLError
 from macaron.repo_finder.repo_finder_enums import CommitFinderInfo, RepoFinderInfo
 from macaron.slsa_analyzer.provenance.intoto import InTotoPayload, ProvenanceSubjectPURLMatcher
@@ -491,16 +491,28 @@ class Provenance(ORMBase):
     component: Mapped["Component"] = relationship(back_populates="provenance")
 
     #: The SLSA version.
-    version: Mapped[str] = mapped_column(String, nullable=False)
+    slsa_version: Mapped[str] = mapped_column(String, nullable=True)
+
+    #: The SLSA level.
+    slsa_level: Mapped[int] = mapped_column(Integer, default=0)
 
     #: The release tag commit sha.
     release_commit_sha: Mapped[str] = mapped_column(String, nullable=True)
 
     #: The release tag.
     release_tag: Mapped[str] = mapped_column(String, nullable=True)
 
-    #: The provenance payload content in JSON format.
-    provenance_json: Mapped[str] = mapped_column(String, nullable=False)
+    #: The repository URL from the provenance.
+    repository_url: Mapped[str] = mapped_column(String, nullable=True)
+
+    #: The commit sha from the provenance.
+    commit_sha: Mapped[str] = mapped_column(String, nullable=True)
+
+    #: The provenance payload.
+    provenance_payload: Mapped[InTotoPayload] = mapped_column(ProvenancePayload, nullable=False)
+
+    #: The verified status of the provenance.
+    verified: Mapped[bool] = mapped_column(Boolean, nullable=False, default=False)
 
     #: A one-to-many relationship with the release artifacts.
     artifact: Mapped[list["ReleaseArtifact"]] = relationship(back_populates="provenance")

src/macaron/provenance/__init__.py

@@ -0,0 +1,4 @@
+# Copyright (c) 2024 - 2025, Oracle and/or its affiliates. All rights reserved.
+# Licensed under the Universal Permissive License v 1.0 as shown at https://oss.oracle.com/licenses/upl/.
+
+"""This package contains the provenance tools for software components."""