Prepare geoclimate 0.0.2 release

bdtopo/pom.xml

@@ -17,19 +17,16 @@
     <artifactId>bdtopo</artifactId>
     <dependencies>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-json</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-sql</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
             <groupId>org.orbisgis.data</groupId>
@@ -55,10 +52,6 @@
             <groupId>org.orbisgis.geoclimate</groupId>
             <artifactId>common-utils</artifactId>
         </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
 
         <!-- Test dependencies -->
         <dependency>

bdtopo/src/main/groovy/org/orbisgis/geoclimate/bdtopo/BDTopoUtils.groovy

@@ -30,7 +30,6 @@ import org.orbisgis.geoclimate.utils.AbstractScript
 abstract class BDTopoUtils extends AbstractScript {
 
     BDTopoUtils() {
-        super(BDTopoUtils.class)
     }
 
     /**

common-utils/pom.xml

@@ -19,9 +19,8 @@
 
     <dependencies>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
             <groupId>org.slf4j</groupId>

common-utils/src/main/groovy/org/orbisgis/geoclimate/utils/AbstractScript.groovy

@@ -1,34 +1,45 @@
+/**
+ * GeoClimate is a geospatial processing toolbox for environmental and climate studies
+ * <a href="https://github.com/orbisgis/geoclimate">https://github.com/orbisgis/geoclimate</a>.
+ *
+ * This code is part of the GeoClimate project. GeoClimate is free software;
+ * you can redistribute it and/or modify it under the terms of the GNU
+ * Lesser General Public License as published by the Free Software Foundation;
+ * version 3.0 of the License.
+ *
+ * GeoClimate is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
+ * for more details <http://www.gnu.org/licenses/>.
+ *
+ *
+ * For more information, please consult:
+ * <a href="https://github.com/orbisgis/geoclimate">https://github.com/orbisgis/geoclimate</a>
+ *
+ */
 package org.orbisgis.geoclimate.utils
 
-import org.slf4j.Logger
-
 abstract class AbstractScript extends Script {
 
-
-    public Logger logger
-
-
-    AbstractScript(Class aClass) {
-        this.logger = org.slf4j.LoggerFactory.getLogger(aClass.toString())
+    AbstractScript() {
     }
 
-
     static String uuid() { UUID.randomUUID().toString().replaceAll("-", "_") }
 
     void info(def message) {
-        logger.info( message.toString())
+        LoggerUtils.info( message.toString())
     }
 
     void warn(def message) {
-        logger.warn(message.toString())
+        LoggerUtils.warn(message.toString())
     }
 
     void error(def message) {
-        logger.error(message.toString())
+        LoggerUtils.error(message.toString())
     }
 
     void debug(def message) {
-        logger.debug(message.toString())
+        LoggerUtils.debug(message.toString())
     }
 
     /**

common-utils/src/main/groovy/org/orbisgis/geoclimate/utils/LoggerUtils.groovy

@@ -2,11 +2,74 @@ package org.orbisgis.geoclimate.utils
 
 import ch.qos.logback.classic.Level
 import ch.qos.logback.classic.LoggerContext
+import org.slf4j.Logger
 import org.slf4j.LoggerFactory
 
-
+/**
+ * GeoClimate is a geospatial processing toolbox for environmental and climate studies
+ * <a href="https://github.com/orbisgis/geoclimate">https://github.com/orbisgis/geoclimate</a>.
+ *
+ * This code is part of the GeoClimate project. GeoClimate is free software;
+ * you can redistribute it and/or modify it under the terms of the GNU
+ * Lesser General Public License as published by the Free Software Foundation;
+ * version 3.0 of the License.
+ *
+ * GeoClimate is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+ * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
+ * for more details <http://www.gnu.org/licenses/>.
+ *
+ *
+ * For more information, please consult:
+ * <a href="https://github.com/orbisgis/geoclimate">https://github.com/orbisgis/geoclimate</a>
+ *
+ */
 class LoggerUtils {
 
+    static Logger logger
+
+    static LOGLEVEL_KEY="org.orbisgis.geoclimate.loglevel"
+
+    private LoggerUtils() throws IOException{
+        String level = System.getProperty(LOGLEVEL_KEY)
+        if(level){
+            setLoggerLevel(level)
+        }else{
+            setLoggerLevel("info")
+        }
+        logger =org.slf4j.LoggerFactory.getLogger("GeoClimate")
+    }
+
+    private static Logger getLogger(){
+        if(logger == null){
+            try {
+                new LoggerUtils()
+            } catch (IOException e) {
+                e.printStackTrace()
+            }
+        }
+        return logger
+    }
+
+    static info(def message) {
+        getLogger().info( message.toString())
+    }
+
+    static warn(def message) {
+        getLogger().warn(message.toString())
+    }
+
+    static error(def message) {
+        getLogger().error(message.toString())
+    }
+
+    static debug(def message) {
+        getLogger().debug(message.toString())
+    }
+
+    static trace(def message) {
+        getLogger().trace(message.toString())
+    }
 
     /**
      * Utility class to change log level for all loggers

geoclimate/pom.xml → geoclimate-cli/pom.xml

@@ -46,15 +46,15 @@
             <artifactId>h2</artifactId>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy</artifactId>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-json</artifactId>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-sql</artifactId>
         </dependency>
         <dependency>
@@ -85,15 +85,6 @@
             <groupId>org.orbisgis.geoclimate</groupId>
             <artifactId>osmtools</artifactId>
         </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
-       <dependency>
-            <groupId>ch.qos.logback</groupId>
-            <artifactId>logback-classic</artifactId>
-            <version>${logback-version}</version>
-        </dependency>
 
         <!-- Test dependencies -->
         <dependency>

geoclimate/src/main/groovy/org/orbisgis/geoclimate/Geoclimate.groovy → geoclimate-cli/src/main/groovy/org/orbisgis/geoclimate/Geoclimate.groovy

@@ -85,9 +85,9 @@ class Geoclimate implements Callable<Integer> {
     @Override
     Integer call() {
         if (verbose) {
-            LoggerUtils.setLoggerLevel(verbose.trim())
+            System.setProperty(LoggerUtils.LOGLEVEL_KEY, verbose.trim())
         } else {
-            LoggerUtils.setLoggerLevel("INFO")
+            System.setProperty(LoggerUtils.LOGLEVEL_KEY, "INFO")
         }
         if (workflow.trim().equalsIgnoreCase("OSM")) {
             println("The OSM workflow has been started.\nPlease wait...")

geoindicators/pom.xml

@@ -24,9 +24,8 @@
             <artifactId>commons-io</artifactId>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
             <groupId>org.orbisgis.data</groupId>
@@ -55,23 +54,17 @@
             <version>1.4.19</version>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-json</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
-            <groupId>org.codehaus.groovy</groupId>
+            <groupId>org.apache.groovy</groupId>
             <artifactId>groovy-sql</artifactId>
-            <version>${groovy-version}</version>
         </dependency>
         <dependency>
             <groupId>org.orbisgis.geoclimate</groupId>
             <artifactId>common-utils</artifactId>
         </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
 
         <!-- Test dependencies -->
         <dependency>
@@ -85,7 +78,6 @@
             <scope>test</scope>
         </dependency>
     </dependencies>
-
     <build>
         <plugins>
             <plugin>

geoindicators/src/main/groovy/org/orbisgis/geoclimate/Geoindicators.groovy

@@ -25,7 +25,6 @@ import org.orbisgis.geoclimate.utils.AbstractScript
 abstract class Geoindicators extends AbstractScript {
 
     Geoindicators() {
-        super(Geoindicators.class)
     }
 
     //Processes

geoindicators/src/test/groovy/org/orbisgis/geoclimate/geoindicators/NoiseIndicatorsTests.groovy

@@ -24,6 +24,7 @@ import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.io.TempDir
 import org.orbisgis.data.H2GIS
 import org.orbisgis.geoclimate.Geoindicators
+import org.orbisgis.geoclimate.utils.LoggerUtils
 
 import static org.junit.jupiter.api.Assertions.assertNotNull
 import static org.junit.jupiter.api.Assertions.assertTrue
@@ -43,11 +44,11 @@ class NoiseIndicatorsTests {
 
     @Test
     void groundAcousticLayer() {
-        h2GIS.load(SpatialUnitsTests.class.getResource("road_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("building_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("veget_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("hydro_test.geojson"), true)
-        def zone = h2GIS.load(SpatialUnitsTests.class.getResource("zone_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("road_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("building_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("veget_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("hydro_test.geojson"), true)
+        def zone = h2GIS.load(SpatialUnitsTests.getResource("zone_test.geojson"), true)
 
         def env = h2GIS.getSpatialTable(zone).getExtent()
         if (env) {

geoindicators/src/test/groovy/org/orbisgis/geoclimate/geoindicators/RsuIndicatorsTests.groovy

@@ -405,11 +405,11 @@ class RsuIndicatorsTests {
 
     @Test
     void smallestCommunGeometryTest() {
-        h2GIS.load(SpatialUnitsTests.class.getResource("road_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("building_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("veget_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("hydro_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("zone_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("road_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("building_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("veget_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("hydro_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("zone_test.geojson"), true)
 
         def outputTableGeoms = Geoindicators.SpatialUnits.prepareTSUData(h2GIS,
                 'zone_test', 'road_test', '',
@@ -751,11 +751,11 @@ class RsuIndicatorsTests {
 
     @Test
     void groundLayer() {
-        h2GIS.load(SpatialUnitsTests.class.getResource("road_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("building_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("veget_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.getResource("hydro_test.geojson"), true)
-        def zone = h2GIS.load(SpatialUnitsTests.class.getResource("zone_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("road_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("building_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("veget_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("hydro_test.geojson"), true)
+        def zone = h2GIS.load(SpatialUnitsTests.getResource("zone_test.geojson"), true)
 
         def env = h2GIS.getSpatialTable(zone).getExtent()
         if (env) {

geoindicators/src/test/groovy/org/orbisgis/geoclimate/geoindicators/SpatialUnitsTests.groovy

@@ -27,10 +27,9 @@ import org.junit.jupiter.api.io.TempDir
 import org.locationtech.jts.io.WKTReader
 import org.orbisgis.data.POSTGIS
 import org.orbisgis.geoclimate.Geoindicators
-
 import static org.junit.jupiter.api.Assertions.assertEquals
 import static org.junit.jupiter.api.Assertions.assertNotNull
-import static org.orbisgis.data.H2GIS.open
+import org.orbisgis.data.H2GIS
 
 class SpatialUnitsTests {
 
@@ -44,11 +43,11 @@ class SpatialUnitsTests {
     ]
     static POSTGIS postGIS;
 
-    private static def h2GIS
+    private static H2GIS h2GIS
 
     @BeforeAll
     static void beforeAll() {
-        h2GIS = open(folder.getAbsolutePath() + File.separator + "spatialUnitsTests;AUTO_SERVER=TRUE")
+        h2GIS = H2GIS.open(folder.getAbsolutePath() + File.separator + "spatialUnitsTests;AUTO_SERVER=TRUE")
         postGIS = POSTGIS.open(dbProperties)
         System.setProperty("test.postgis", Boolean.toString(postGIS != null));
     }
@@ -180,11 +179,11 @@ class SpatialUnitsTests {
 
     @Test
     void prepareGeometriesForRSUWithFilterTest() {
-        h2GIS.load(SpatialUnitsTests.class.class.getResource("road_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.class.getResource("rail_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.class.getResource("veget_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.class.getResource("hydro_test.geojson"), true)
-        h2GIS.load(SpatialUnitsTests.class.class.getResource("zone_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("road_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("rail_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("veget_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("hydro_test.geojson"), true)
+        h2GIS.load(SpatialUnitsTests.getResource("zone_test.geojson"), true)
 
         def outputTableGeoms = Geoindicators.SpatialUnits.prepareTSUData(h2GIS,
                 'zone_test', 'road_test', 'rail_test', 'veget_test',