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@Aitslab Cell Death, Lysosomes and Artificial Intelligence Group (Aits Lab), Lund University

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    32 repositories

    • EasyNER

      Public
      a customzable pipeline for information extraction
      Jupyter Notebook
      •
      Apache License 2.0
      •2•13•7•0•Updated Jan 22, 2025Jan 22, 2025

    • Microscopy_Nuclei

      Public
      This repo is for the nuclei segmentation of microscopy screen
      Jupyter Notebook
      •1•0•4•0•Updated Jan 15, 2025Jan 15, 2025

    • training

      Public
      training materials related to data science and artificial intelligence, especially for life scientists
      4•17•0•0•Updated Dec 18, 2024Dec 18, 2024

    • SOPs

      Public
      standard operating procedures in the CDLAI grroup
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • lunghisto

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•6•0•Updated Dec 11, 2024Dec 11, 2024

    • awesome-biomaterials-datascience

      Public
      awesome list of datasets, databases and data science tools/workflows for studying biomaterials
      Other
      •0•1•0•0•Updated May 22, 2024May 22, 2024

    • CellDeathCensus

      Public
      repository for the Cell Death Census publication
      Jupyter Notebook
      •0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • Histo_Features

      Public
      This is for individual histology features manuscript. It is the main steps of preprocessing, training regressing models and evaluation scripts.
      Jupyter Notebook
      •1•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • Histology_XAI

      Public
      This is a Repo for Histology Project specifically for Explainable AI manuscript
      Jupyter Notebook
      •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • imageanalysis

      Public
      image analysis student projects from Lund University
      Jupyter Notebook
      •1•4•1•0•Updated Oct 10, 2023Oct 10, 2023

    • BioNLP

      Public
      Repository for student projects within biomedical text mining from Lund University
      Jupyter Notebook
      •13•50•0•9•Updated May 26, 2023May 26, 2023

    • Aitslab.github.io

      Public
      website for the research group
      HTML
      •0•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • openchart-se

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Jan 4, 2023Jan 4, 2023

    • corona

      Public
      data and tools related to corona virus research
      Jupyter Notebook
      •6•11•0•0•Updated Jan 2, 2023Jan 2, 2023

    • open_educational_resources

      Public
      open educational resources developed by our group
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2022Jun 26, 2022

    • bioimaging

      Public
      tools, code and datasets for bioimage analysis
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

    • sustainability

      Public
      a repo for sustainability-related activities in our research group
      0•0•0•0•Updated Apr 15, 2022Apr 15, 2022

    • ukraineinfo

      Public
      info for students and scholars who are considering to relocate to Sweden
      0•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • nlp_2021_alexander_petter

      Public
      HTML
      •3•1•0•0•Updated Apr 1, 2022Apr 1, 2022

    • EasyOutline

      Public
      GUI Application to view predictions of microscopy images with the option to edit and retrieve new annotations for new models.
      Python
      •2•0•0•0•Updated Dec 12, 2021Dec 12, 2021

    • clinical_NLP_SE

      Public
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Aug 25, 2021Aug 25, 2021

    • ShortProject2020

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jul 14, 2021Jul 14, 2021

    • SE_clinical_text_annotator

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 24, 2021May 24, 2021

    • Infrastructure

      Public
      HTML
      •0•0•0•0•Updated May 21, 2021May 21, 2021

    • virtualstain

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 20, 2021May 20, 2021

    • Microscopy_image_analysis_folder

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Aug 12, 2020Aug 12, 2020

    • BINP37

      Public
      Short Project on
      Jupyter Notebook
      •1•0•0•0•Updated Jul 5, 2020Jul 5, 2020

    • EDAN70

      Public
      Jupyter Notebook
      •3•0•0•0•Updated Jul 3, 2020Jul 3, 2020

    • rapidreview

      Public
      this is the repository for the RapidReview tool
      0•0•0•0•Updated Apr 5, 2020Apr 5, 2020

    • career

      Public
      career development resouces for PhD students and Postdocs
      0•0•0•0•Updated Mar 25, 2020Mar 25, 2020