Skip to content

@BoevaLab Boeva Lab, ETH Zurich

Change the repository type filter

All

    Repositories list

    32 repositories

    • FREEC

      Public
      Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
      C++
      •49•147•87•10•Updated Aug 22, 2024Aug 22, 2024

    • sparsesurv

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•5•0•Updated Jul 16, 2024Jul 16, 2024

    • survboard

      Public
      R
      •
      MIT License
      •0•6•2•0•Updated Jul 15, 2024Jul 15, 2024

    • infercnvpy

      Public
      Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•1•0•1•Updated May 21, 2024May 21, 2024

    • scalop

      Public
      Single Cell Analysis Operations
      R
      •
      MIT License
      •19•0•0•0•Updated May 16, 2024May 16, 2024

    • ANS_supplementary_information

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • nsclc_patterns

      Public
      0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • CRCPolyp

      Public
      Supporting code for Identification of early DNA methylation field cancerization in normal colonic mucosa in patients with adenomas and neoplastic lesions
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • CHIPIN

      Public
      ChIP-seq Intersample Normalization
      R
      •
      GNU General Public License v3.0
      •6•7•3•1•Updated Feb 1, 2024Feb 1, 2024

    • Multi-omics-noise-resistance

      Public
      More data, more problems? On noise resistance in multi-omics cancer survival models
      Python
      •
      MIT License
      •1•6•0•0•Updated Jul 29, 2023Jul 29, 2023

    • CanSig

      Public
      Discovering de novo shared transcriptional programs in single cancer cells
      computational-biologyrepresentation-learningcancer-researchsingle-cell-rna-seqdeep-generative-modelling
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•12•12•0•Updated Jul 26, 2023Jul 26, 2023

    • HMCan

      Public
      C++
      •4•7•1•0•Updated Jun 9, 2023Jun 9, 2023

    • Teaching

      Public
      Teaching materials
      Jupyter Notebook
      •0•2•0•0•Updated May 16, 2023May 16, 2023

    • LILY

      Public
      Detection of super-enhancers in cancer data
      R
      •9•20•0•1•Updated Apr 10, 2023Apr 10, 2023

    • CanSig-Supplementary-Information

      Public
      This repository supplements the CanSig tool (https://github.com/boevaLab/cansig), providing additional information on performed experiments.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 27, 2023Mar 27, 2023

    • CanSig-integration

      Public
      Python
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • SplatterSim

      Public
      a package to simulate cancer single cells with joint CNV profiles based on Splatter
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 17, 2023Jan 17, 2023

    • HongzheLabro

      Public
      This is the code collection for Hongzhe Li's Lab rotation project
      Jupyter Notebook
      •0•0•0•0•Updated Jan 3, 2023Jan 3, 2023

    • latte

      Public
      Data analysis of latent representations
      Python
      •
      MIT License
      •1•3•1•1•Updated Dec 30, 2022Dec 30, 2022

    • ONCOCNV

      Public
      ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
      R
      •12•24•13•1•Updated Nov 2, 2022Nov 2, 2022

    • TFCox

      Public
      Tensorflow implementation of the Cox Proportional Hazards model
      Jupyter Notebook
      •0•1•0•0•Updated Jun 9, 2022Jun 9, 2022

    • CIMP_etiology_oncogenic_transformation

      Public
      Supporting code for the analysis in "Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype (CIMP): a pan-cancer analysis
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Feb 23, 2022Feb 23, 2022

    • QuantumClone

      Public
      Clonal reconstruction from HTS data
      R
      •6•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • Group_Lasso_and_Multitask

      Public
      Python
      •1•1•0•0•Updated Sep 2, 2021Sep 2, 2021

    • Multi-task-Side-Channel

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 16, 2020Nov 16, 2020

    • ACCanalysisCode

      Public
      Code for the CIMP in ACC paper
      1•0•0•0•Updated Apr 4, 2020Apr 4, 2020

    • sci

      Public
      Python
      •
      Other
      •6•0•0•0•Updated Mar 18, 2020Mar 18, 2020

    • SV-Bay

      Public
      Detection of structural variants in cancer mate-pair and paired-end data
      Python
      •2•12•4•0•Updated May 3, 2019May 3, 2019

    • MasterTF

      Public
      Python
      •1•1•0•0•Updated Aug 20, 2018Aug 20, 2018

    • ChIPseqReadSimulator

      Public
      ChIPseqReadSimulator: a tool to simulate ChIP-seq signal
      C++
      •0•0•0•0•Updated Feb 14, 2017Feb 14, 2017