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    25 repositories

    • BovReg_eQTL

      Public
      Repository
      Nextflow
      •
      MIT License
      •2•7•0•1•Updated Oct 23, 2024Oct 23, 2024

    • sarek

      Public
      Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      •
      MIT License
      •417•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • comm-data-portal-projects

      Public
      Fork of the FAANG repository to capture FAANG project information and images for project specific pages on FAANG data portal. Original repo here:
      Apache License 2.0
      •2•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • .github

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • nf-workshop20

      Public
      BovReg Nextflow workshop and hackathon organized by the CRG on 17-20 November 2020
      Apache License 2.0
      •2•7•0•0•Updated Jan 16, 2024Jan 16, 2024

    • logos

      Public
      Repository containing BovReg official logos
      0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • nf-core-atacseq

      Public
      nf-core original pipeline here:
      Nextflow
      •
      MIT License
      •119•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • nf-core-sarek

      Public
      Original nf-core pipeline here:
      Nextflow
      •
      MIT License
      •417•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • nf-core-rnaseq

      Public
      Original nf-core pipeline here:
      Nextflow
      •
      MIT License
      •711•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • nf-core-methylseq

      Public
      Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
      Nextflow
      •
      MIT License
      •145•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • nf-core-hic

      Public
      Original nf-core pipeline here:
      Nextflow
      •
      MIT License
      •55•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • nf-core-nanoseq

      Public
      Original nf-core pipeline here:
      Nextflow
      •
      MIT License
      •81•0•0•0•Updated Dec 20, 2023Dec 20, 2023

    • nf-core-smrnaseq

      Public
      A small-RNA sequencing analysis pipeline
      Nextflow
      •
      MIT License
      •126•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • nf-core-chipseq

      Public
      nf-core original pipeline here:
      Nextflow
      •
      MIT License
      •150•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • atacseq-workshop-limoges

      Public
      ATAC-seq tutorial to be used during Limoges Course (November 2022)
      Apache License 2.0
      •1•2•0•0•Updated Nov 10, 2022Nov 10, 2022

    • nf-cage

      Public
      DSL2 NextFlow wrapped CAGE-Seq analysis pipeline from demultiplexing to base pair resolution read counting (i.e. compatible import to CAGEfightR)
      Makefile
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 30, 2022Sep 30, 2022

    • nf-benchmark

      Public
      Shell
      •
      MIT License
      •4•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • nf-core-rnaseq-bovreg

      Public
      Original nf-core pipeline here:
      Nextflow
      •
      MIT License
      •711•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • hackathon-nov-2020-pr7-bacterial-dna-pipeline

      Public
      Nextflow
      •1•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • hackathon-nov-2020-pr2-wgs-pipeline

      Public
      Nextflow
      •1•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • hackathon-nov-2020-pr1-snakemake-nextflow

      Public
      3•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • IsomiR-Window

      Public
      Isomir Window A system for analyzing small-RNA-seq data in an integrative and user-friendly manner
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 31, 2020Jul 31, 2020

    • BovReg-Reproducibility

      Public
      This repository aims to be a template to develop reproducible analyses for BovReg partners involved in bioinformatics
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • nf-faang-workshop20

      Public
      Nextflow training material for FAANG workshop February 2020
      Nextflow
      •
      MIT License
      •56•4•0•0•Updated Feb 24, 2020Feb 24, 2020

    • nf-core-faang-wksh20

      Public
      nf-core training material for FAANG workshop February 2020
      Apache License 2.0
      •0•0•0•0•Updated Feb 10, 2020Feb 10, 2020