Repositories list

• wall-of-software

  Public
  A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI

  JavaScript

  •8•2•1•1•Updated Nov 26, 2024Nov 26, 2024

• set-website

  Public
  Website for the software engineering team (SET)

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •315•1•2•0•Updated Nov 25, 2024Nov 25, 2024

• hetionet-analysis

  Public
  Various data analysis performed using Hetionet, a hetnet of biomedical knowledge.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• set-presentations

  Public
  A repository for presentations from the DBMI Software Engineering Team (SET)

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•1•0•Updated Nov 1, 2024Nov 1, 2024

• screensaver

  Public
  Fun visualization that can be used as a background

  HTML

  •

  MIT License

  •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

• demo-python-software-testing

  Public
  A project to help demonstrate Python software testing.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• set-intake

  Public
  Request support from the Software Engineering Team

  0•0•7•0•Updated Sep 10, 2024Sep 10, 2024

• dbmi_seminar

  Public
  @CU-DBMI seminar committee material

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• mends-on-fhir

  Public
  Python

  •2•3•0•0•Updated Aug 3, 2024Aug 3, 2024

• rootstock

  Public
  TEST for Manubot AI Editor

  HTML

  •

  Other

  •179•0•0•1•Updated Jul 17, 2024Jul 17, 2024

• pmc-crawler

  Public
  Crawls PMC for publications by specified authors

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• dei-resources

  Public
  An open source repository for shared Diversity, Equity, and Inclusion (DEI) educational resources.

  BSD 3-Clause "New" or "Revised" License

  •1•0•2•1•Updated May 21, 2024May 21, 2024

• rtx-kg2-gateway

  Public
  Enabling RTX-KG2 data access through various means.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•2•0•Updated May 17, 2024May 17, 2024

• gc-cloud-storage-bucket

  Public
  Template for creating Cloud Storage bucket on Google Cloud.

  templatecloud-resourcesterraform+ 5google-cloudcloud-storagebucketcookiecutter-templategsutil

  CUE

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•10•0•Updated Apr 11, 2024Apr 11, 2024

• healthcare-data-harmonization

  Public
  This is an engine that converts data of one structure to another, based on a configuration file which describes how. There is an accompanying syntax to make writing mappings easier and more robust.

  Java

  •

  Apache License 2.0

  •66•1•0•0•Updated Mar 24, 2024Mar 24, 2024

• redirects

  Public template
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Mar 14, 2024Mar 14, 2024

• action-pr-test-3

  Public
  A test repo to see why workflows submitted from forked PRs weren't running, please ignore

  1•0•1•1•Updated Mar 7, 2024Mar 7, 2024

• set-effort-analysis

  Public
  Data analysis on DBMI Software Engineering Team efforts.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•1•0•Updated Feb 22, 2024Feb 22, 2024

• demo-python-memory-reference-accounting

  Public
  Demonstrating Python memory allocator reference counting and debug.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•3•0•Updated Feb 22, 2024Feb 22, 2024

• demo-poetry-dynamic-semver-with-docker-hub-push

  Public
  A demonstrational repository showing how Python Poetry dynamic versioning can be used to distribute Docker container images on Docker Hub for Python packages.

  pythonpoetrydocker-hub+ 3semver-releasedynamic-versioningdocker

  Dockerfile

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jan 2, 2024Jan 2, 2024

• RTX-KG2

  Public
  Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

  Python

  •

  MIT License

  •8•0•0•0•Updated Dec 7, 2023Dec 7, 2023

• CCPM-IO.github

  Public
  A special GitHub repository for setting the CCPM-IO organization profile and default community health files.

  2•0•0•0•Updated Nov 13, 2023Nov 13, 2023

• omop-fhir-data

  Public
  Python

  •1•1•0•0•Updated Sep 28, 2023Sep 28, 2023

• example-hpc-alpine-python

  Public
  Demonstrating the use of Python on Alpine, a High Performance Compute (HPC) cluster hosted by the University of Colorado Boulder's Research Computing.

  Shell

  •

  Apache License 2.0

  •1•0•1•0•Updated Sep 15, 2023Sep 15, 2023

• redirects-website

  Public template
  Test out "chatroom" redirection link below:

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 8, 2023Sep 8, 2023

• r-and-python-env-experiments

  Public
  Exploring R and Python environment management.

  Apache License 2.0

  •1•0•2•0•Updated Apr 6, 2023Apr 6, 2023

• demo-github-actions

  Public
  This repository helps demonstrate various Github Actions capabilities.

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• toggl-work-reports

  Public
  Perform routine toggl work report generation or calculations

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

• notebooks

  Public
  Demonstrational and shareable Jupyter notebooks deployed using JupyterLite on Github Pages.

  Jupyter Notebook

  •1•0•0•0•Updated Dec 18, 2022Dec 18, 2022

• set-notegraph

  Public archive
  Software engineering team notes.

  2•2•0•0•Updated Dec 7, 2022Dec 7, 2022