Repositories list

• viral-genomics-immunosupression-and-countermeasures

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• immunocompetent_timecourse

  Public
  Repository of code for a longitudinal SARS-CoV-2 study in immunocompetent patients examining viral evolution.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 29, 2024Jun 29, 2024

• k18-hACE2-coinfection-transcriptomics

  Public
  Code used in Clark et al, 2023

  R

  •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

• AioMinor

  Public
  Perl

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 8, 2023Aug 8, 2023

• AGILE-molnupiravir-viral-genomics

  Public
  Repository of code and metadata used to analyse the SARS-CoV-2 sequencing data from the AGILE CST-2 phase IIa clinical trial

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Dec 12, 2022Dec 12, 2022

• Ebola_linked_mutations

  Public
  Perl

  •0•0•0•0•Updated Dec 5, 2022Dec 5, 2022

• LeTRS

  Public
  Coronavirus Leader-TRS identification tool (Dong et al 2022)

  Perl

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 12, 2022Aug 12, 2022