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    18 repositories

    • owl-pipeline-client

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Mar 20, 2024Mar 20, 2024

    • IMAXT-TT1-4T1

      Public
      R
      •0•1•0•0•Updated Oct 13, 2022Oct 13, 2022

    • imaxt-image

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 21, 2022Aug 21, 2022

    • imc-nuclear-segmentation

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Mar 1, 2022Mar 1, 2022

    • IMAXT-TT1-PDX

      Public
      R
      •0•1•0•0•Updated Feb 26, 2022Feb 26, 2022

    • stpt-mosaic-pipeline

      Public
      STPT mosaic pipeline
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 31, 2022Jan 31, 2022

    • MERlin

      Public
      MERlin is an extensible analysis pipeline applied to decoding MERFISH data
      Python
      •
      MIT License
      •30•0•0•0•Updated Oct 11, 2021Oct 11, 2021

    • owl-pipeline-server

      Public
      Owl is a job scheduler that allows to submit user jobs to a Kubernetes cluster from anywhere.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 7, 2021Sep 7, 2021

    • imaxt-public-notebooks

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 16, 2021Jun 16, 2021

    • Bressan_etal_2021_code

      Public
      Code associated with the manuscript from Bressan, D et Al , Nature Cancer, 2021
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021

    • jupyterhub-templates

      Public
      HTML
      •0•0•0•0•Updated Feb 26, 2021Feb 26, 2021

    • imaxtml

      Public
      Machine learning modules
      0•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • stardist

      Public
      StarDist - Object Detection with Star-convex Shapes
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •222•0•0•0•Updated Jul 12, 2020Jul 12, 2020

    • notebook-templates

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 2, 2020Jun 2, 2020

    • mcdlib

      Public
      MCD file parser library
      C++
      •
      Apache License 2.0
      •3•0•0•0•Updated Jun 7, 2019Jun 7, 2019

    • imdlib

      Public
      IMD file parser library
      C++
      •
      Apache License 2.0
      •2•0•0•0•Updated Jun 7, 2019Jun 7, 2019

    • jimaxt

      Public
      Python
      •1•0•0•0•Updated Jan 15, 2019Jan 15, 2019

    • DATA-SCIENCE-BOWL-2018

      Public
      DATA-SCIENCE-BOWL-2018 Find the nuclei in divergent images to advance medical discovery
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •73•0•0•0•Updated Jan 30, 2018Jan 30, 2018