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    8 repositories

    • Wakhan

      Public
      Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
      Python
      •
      MIT License
      •1•37•0•0•Updated Feb 20, 2025Feb 20, 2025

    • Severus

      Public
      A tool for somatic structural variant calling using long reads
      Python
      •
      Other
      •7•115•13•0•Updated Feb 19, 2025Feb 19, 2025

    • longread_somatic_nf

      Public
      Nextflow
      •0•2•1•0•Updated Feb 17, 2025Feb 17, 2025

    • hapcorrect

      Public
      Haplotypes phase-switching errors correction in long reads
      Python
      •
      MIT License
      •0•5•0•0•Updated Jan 24, 2025Jan 24, 2025

    • hapdup

      Public
      Pipeline to convert a haploid assembly into diploid
      Python
      •
      Other
      •11•96•5•0•Updated Jan 23, 2025Jan 23, 2025

    • strainy

      Public
      Graph-based assembly phasing
      Python
      •
      Other
      •5•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • minda

      Public
      Python
      •
      Other
      •3•14•2•0•Updated Jun 25, 2024Jun 25, 2024

    • hapdiff

      Public
      SV calling for diploid assemblies
      Python
      •
      MIT License
      •3•24•2•0•Updated Mar 22, 2024Mar 22, 2024