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@LOVDnl Leiden Open Variation Database

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    14 repositories

    • HGVS-syntax-checker

      Public
      The LOVD HGVS syntax checker: a PHP library to validate variant descriptions in the HGVS nomenclature syntax. Aims to cover all possible valid syntax on DNA, RNA, and protein level, as well as many invalid descriptions, based on user input. Note that this library does not perform sequence-level validation. For this, use VariantValidator.org.
      PHP
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • api.lovd.nl

      Public
      Generic LOVD APIs, available at api.LOVD.nl.
      PHP
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 20, 2025Feb 20, 2025

    • VKGL_import

      Public
      Scripts that will take export files of DNA variant data from the Dutch genome diagnostic laboratories (VKGL), group the data, normalize the data, and import it into an LOVD3 or LOVD+ instance, possibly updating previous records.
      PHP
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • LOVD3

      Public
      LOVD3 development repository
      PHP
      •
      GNU General Public License v3.0
      •4•26•81•7•Updated Jan 31, 2025Jan 31, 2025

    • caches

      Public
      Repository storing caches in use by several projects, like the VKGL import script.
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • fdp.lovd.nl

      Public
      Source code for the FDP.lovd.nl FAIR Data Point.
      PHP
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • LOVDplus

      Public
      LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
      ngswhole-exome-sequencingvariant-analysisngs-analysisvariant-interpretationlovd
      PHP
      •
      GNU General Public License v3.0
      •1•5•2•1•Updated Jun 4, 2024Jun 4, 2024

    • EJP-RD-LOVD-model

      Public
      Source code for the EJP-RD-LOVD semantic model.
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • external_view

      Public
      External LOVD data viewer; allows any PHP website to show live data from a remote LOVD3 instance.
      PHP
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 27, 2023Feb 27, 2023

    • VarNomen

      Public
      HTML
      •5•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • retina.lovd.nl

      Public
      Repository for the retina.lovd.nl website
      PHP
      •0•0•0•0•Updated Nov 8, 2021Nov 8, 2021

    • MobiDetails

      Public
      WebApp for DNA variants interpretation
      Python
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • geneloader

      Public
      Load genes, transcripts, and optionally diseases directly into LOVD3, using reliable external sources (HGNC and OMIM).
      PHP
      •
      GNU General Public License v3.0
      •2•2•0•1•Updated Oct 13, 2017Oct 13, 2017

    • LOVD3_course

      Public
      Scripts to build the LOVD3 course databases
      PHP
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 27, 2016May 27, 2016