Repositories list

• osl-dynamics

  Public
  Methods for studying dynamic functional brain activity in neuroimaging data.

  Python

  •

  Other

  •18•62•5•0•Updated Dec 21, 2024Dec 21, 2024

• osl-ephys

  Public
  OHBA Software Library Electrophys Analysis Tools

  pythonmegeeg

  Python

  •

  Other

  •9•46•24•2•Updated Dec 17, 2024Dec 17, 2024

• OHBA-Examples

  Public
  Example scripts used by OHBA

  Python

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• Tinda

  Public
  Temporal-Interval Network Density Analysis

  MATLAB

  •1•1•0•0•Updated Dec 3, 2024Dec 3, 2024

• Gohil2024_AgeEffectsRSNs

  Public
  Scripts for the results in Gohil et al. (2024).

  Python

  •1•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• OHBA-analysis.github.io

  Public
  CSS

  •1•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• Gohil2024_NormativeHMM

  Public
  Scripts for performing a normative HMM analysis with M/EEG data.

  0•0•0•0•Updated Oct 13, 2024Oct 13, 2024

• Huang2024_EvidenceForUncoupledDynamics

  Public
  Scripts for the "Evidence for transient, uncoupled power and functional connectivity dynamics" manuscript.

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• Cho2024_MEEG_RSN

  Public
  Scripts for the Cho et al. (2024) manuscript

  neurosciencehidden-markov-modelneuroimaging-analysis

  Python

  •

  MIT License

  •1•6•0•0•Updated Sep 4, 2024Sep 4, 2024

• Trubshaw2024_NeurodegenerativeDisorders

  Public
  Analysis scripts for reproducing the results in (Trubshaw, 2024).

  Python

  •1•1•0•0•Updated Jun 9, 2024Jun 9, 2024

• meg-simulation

  Public
  Scripts to simulate MEG data

  Python

  •0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• Huang2024_ModelVariabilityWithEmbeddings

  Public
  Scripts for the "Modelling subject variability in dynamic functional brain networks using embeddings" manuscript

  Python

  •

  MIT License

  •2•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• Gohil2024_NetworkAnalysisOfTaskData

  Public
  Example scripts for Gohil et al., "Dynamic Network Analysis of Electrophysiological Task Data" (2024).

  Python

  •2•3•0•0•Updated Mar 18, 2024Mar 18, 2024

• Quinn2022_GLMSpectrum

  Public
  Python

  •

  MIT License

  •1•6•0•0•Updated Nov 2, 2023Nov 2, 2023

• HMM-MAR

  Public
  Toolbox for segmentation and characterisation of transient connectivity

  MATLAB

  •

  GNU General Public License v3.0

  •96•215•8•1•Updated Jul 4, 2023Jul 4, 2023

• Kohl2023_PD_HMM

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 17, 2023May 17, 2023

• osl-docs

  Public
  Documentation for Matlab OSL - NO LONGER SUPPORTED - Please use Python version instead: https://github.com/OHBA-analysis/osl

  HTML

  •1•0•0•5•Updated Apr 26, 2023Apr 26, 2023

• osl-core

  Public
  Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl

  MATLAB

  •14•30•26•2•Updated Apr 26, 2023Apr 26, 2023

• RepresentationalDynamicsModelling

  Public
  MATLAB

  •3•1•0•1•Updated Jun 9, 2022Jun 9, 2022

• Higgins2020_Neuron

  Public
  This repository contains all the files used for the analysis in the paper "Replay bursts in humans coincide with activation of the default mode and parietal alpha networks", Higgins et al Neuron 2020

  MATLAB

  •3•3•0•0•Updated Nov 19, 2021Nov 19, 2021

• Quinn2021_Waveform

  Public
  Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547

  python-3emdcc-by+ 3oscillationsnon-linear-dynamicsoriginal-analysis

  Python

  •

  Other

  •2•7•0•0•Updated Sep 23, 2021Sep 23, 2021

• ohba_maxfilter

  Public
  Python tool for batch processing Megin Maxfilter processing on fif MEG files

  Python

  •1•0•0•0•Updated Jul 9, 2021Jul 9, 2021

• MEG-ROI-nets

  Public
  Stationary network analysis for MEG

  MATLAB

  •10•12•3•0•Updated May 20, 2021May 20, 2021

• ohba_meg_qc

  Public
  Python tool for generating quality check reports from MEG recordings

  Python

  •0•0•0•0•Updated Apr 29, 2021Apr 29, 2021

• Quinn2019_BurstHMM

  Public
  Transient event detection with Hidden Markov Models

  data-analysishidden-markov-modelmagnetoencephalography

  MATLAB

  •

  MIT License

  •4•7•0•0•Updated Mar 4, 2021Mar 4, 2021

• ohba-external

  Public
  External libraries used by OSL and related OHBA software

  MATLAB

  •1•1•0•0•Updated May 13, 2020May 13, 2020

• emd-mirror

  Public
  Mirror repository for EMD package: issue-tracking and development happens at https://gitlab.com/emd-dev/emd

  Python

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Mar 14, 2020Mar 14, 2020

• Quinn2018_TaskHMM

  Public
  Task-Evoked Dynamic Network Analysis through Hidden Markov Modelling

  preprocessinghidden-markov-modelmagnetoencephalography+ 2matlabanalysis-script

  MATLAB

  •

  MIT License

  •4•17•3•0•Updated Apr 3, 2019Apr 3, 2019

• parcellations

  Public
  A collection of parcellations

  0•2•0•0•Updated Feb 28, 2019Feb 28, 2019

• abeysuriya_wc_isp

  Public
  Code for Abeysuriya et al. "A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks"

  HTML

  •2•5•0•0•Updated Dec 20, 2017Dec 20, 2017