QData

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48 repositories

DeepVHPPI
Public
Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans
Python
•2•9•0•0•Updated Dec 4, 2024Dec 4, 2024
C-Tran
Public
General Multi-label Image Classification with Transformers
computer-vision transformers multi-label-classification
Python
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MIT License
•43•255•11•0•Updated Nov 2, 2024Nov 2, 2024
TextAttack
Public
TextAttack 🐙 is a Python framework for adversarial attacks, data augmentation, and model training in NLP https://textattack.readthedocs.io/en/master/
security data-augmentation adversarial-machine-learning adversarial-examples nlp machine-learning natural-language-processing adversarial-attacks
Python
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MIT License
•401•3k•62•6•Updated Jul 25, 2024Jul 25, 2024
LaMP
Public
ECML 2019: Graph Neural Networks for Multi-Label Classification
nlp computer-vision transformers graph-attention-networks multi-label-classification graph-neural-networks
Python
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MIT License
•18•89•3•0•Updated Jul 21, 2024Jul 21, 2024
deep2Read
Public
https://qdata.github.io/deep2Read/ This website includes a (growing) list of papers and lectures we read on deep learning and related.
jekyll gitpage minimal-mistakes-theme minimal-mistake deep-learning tutorials papers
Ruby
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Apache License 2.0
•15•54•0•0•Updated Jul 21, 2024Jul 21, 2024
qdata-page
Public
https://qdata.github.io/qdata-page/
HTML
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Apache License 2.0
•0•1•1•0•Updated May 28, 2024May 28, 2024
spacetimeformer
Public
Multivariate Time Series Forecasting with efficient Transformers. Code for the paper "Long-Range Transformers for Dynamic Spatiotemporal Forecasting."
Jupyter Notebook
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MIT License
•192•812•36•5•Updated Jan 18, 2024Jan 18, 2024
super_sac
Public
A general model-free off-policy actor-critic implementation. Continuous and Discrete Soft Actor-Critic with multimodal observations, data augmentation, offline learning and behavioral cloning.
Python
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MIT License
•6•2•0•0•Updated Dec 2, 2023Dec 2, 2023
ST-MAML
Public
Python
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Apache License 2.0
•1•0•1•0•Updated May 26, 2023May 26, 2023
PGrad
Public
Python
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MIT License
•1•10•0•0•Updated May 3, 2023May 3, 2023
AdversarialDNN-Playground
Public
VizSec17: Web-based visualization tool for adversarial machine learning / LiveDemo
machine-learning deep-neural-networks tensorflow visualization python neural-network adversarial-samples
Python
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Apache License 2.0
•31•130•2•3•Updated May 1, 2023May 1, 2023
deepWordBug
Public
CodeBase for Paper: "Black-box Generation of Adversarial Text Sequences to Evade Deep Learning Classifiers", / Interactive Demo @
Python
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Apache License 2.0
•26•75•0•1•Updated May 1, 2023May 1, 2023
WIGRAPH
Public
Code for paper "Improving Interpretability via Explicit Word Interaction Graph Layer"
Python
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MIT License
•2•3•0•0•Updated Mar 13, 2023Mar 13, 2023
FastSK
Public
Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/
cpp python-library sequence-classification string-kernel string-classification gkm-svm
Python
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Apache License 2.0
•9•21•1•2•Updated Dec 8, 2022Dec 8, 2022
TextAttack-WebDemo
Public
TextAttack Web Demo
visualization natural-language-processing interpreter human-computer-interaction robustness textattack
Jupyter Notebook
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Apache License 2.0
•4•4•3•1•Updated Jul 5, 2022Jul 5, 2022
MNCOVER
Public
Python
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MIT License
•0•3•1•0•Updated May 11, 2022May 11, 2022
KDiffNet
Public
R
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MIT License
•0•1•0•0•Updated Apr 21, 2022Apr 21, 2022
TextAttack-A2T
Public
A2T: Towards Improving Adversarial Training of NLP Models (EMNLP 2021 Findings)
Python
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MIT License
•2•25•3•0•Updated Sep 12, 2021Sep 12, 2021
TextAttack-Fragile-Interpretations
Public
Python
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MIT License
•0•3•0•0•Updated Sep 7, 2021Sep 7, 2021
deep_control
Public
Deep Reinforcement Learning for Continuous Control in Pytorch
Python
•1•4•0•0•Updated Apr 18, 2021Apr 18, 2021
DeepChrome
Public
Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
bioinformatics deep-neural-networks understanding-computation epigenetic-data
Lua
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Apache License 2.0
•14•62•3•0•Updated Feb 15, 2021Feb 15, 2021
AttentiveChrome
Public
NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin
deep-learning epigenetic-data deep-neural-network interpretable-deep-learning
Lua
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MIT License
•9•27•0•0•Updated Feb 8, 2021Feb 8, 2021
ChromeGCN
Public
Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
dna hi-c dna-sequences graph-convolutional-networks genomics graph-neural-networks
Python
•7•33•0•0•Updated Feb 2, 2021Feb 2, 2021
Reevaluating-NLP-Adversarial-Examples
Public
EMNLP Findings 2020: Reevaluating Adversarial Examples in Natural Language
semantics natural-language textattack suspicion
Jupyter Notebook
•3•7•0•0•Updated Dec 11, 2020Dec 11, 2020
dmc_remastered
Public
A version of the DeepMind Control Suite with randomly generated graphics, for measuring visual generalization in continuous control.
Python
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Apache License 2.0
•2•17•0•0•Updated Oct 19, 2020Oct 19, 2020
Awesome-Robustness-Testing-for-NLP
Public template
A curated list of papers on testing NLP.
0•5•0•0•Updated Oct 19, 2020Oct 19, 2020
deep-learning-undergrad-reading-group
Public
deep learning reading group for undergrads at UVA
SCSS
•0•2•0•0•Updated Oct 18, 2020Oct 18, 2020
DeepLearning4-ProteinSequenceProcessing
Public
(AAAI 2016) MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-Based Protein Structure Prediction"
Lua
•0•1•0•0•Updated Oct 16, 2020Oct 16, 2020
TextAttack-Search-Benchmark
Public
EMNLP BlackBox NLP 2020: Searching for a Search Method: Benchmarking Search Algorithms for Generating NLP Adversarial Examples
search-algorithm adversarial-attacks textattack strict-constraints attack-recipe
Jupyter Notebook
•4•23•0•0•Updated Oct 11, 2020Oct 11, 2020
DeepDiffChrome
Public
"DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
Python
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Apache License 2.0
•5•20•1•0•Updated Dec 10, 2019Dec 10, 2019