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    36 repositories

    • Computation-Neuro-Course

      Public
      Welcome to the land of C Neuro.
      MATLAB
      •
      MIT License
      •7•38•0•0•Updated Dec 19, 2024Dec 19, 2024

    • code-for-SAA-dataprocessing

      Public
      Codes and dataset for Huo and Xu et al. “Hierarchical behavior control by a single class of interneurons”.
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • Calcium_Imaging_of_a_Single_Neuron

      Public
      Extract the light intensity from calcium imaging of a single neuron in C. elegans.
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • Colbert-Processing-Pipeline

      Public
      MATLAB
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • BASS

      Public
      Code for the "Behavioral Action Sequence Segmentation" algorithm.
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • dPCA

      Public
      An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
      Jupyter Notebook
      •
      MIT License
      •94•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • Auto-Worm-Behavior-Detector

      Public
      A software to automatically recognize the behaviours of C. elegans
      MATLAB
      •
      MIT License
      •2•3•0•0•Updated Aug 5, 2024Aug 5, 2024

    • Calculate_the_Curvature_of_a_Centerline

      Public
      Calculate the Curvature of a Centerline of C. elegans
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated May 24, 2024May 24, 2024

    • The-Behaviors-of-Planarians

      Public
      analysis the behavior of planarians
      MATLAB
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • Calcium_Imaging_of_Single_Neuron

      Public
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • ZephIR-preprocessing

      Public
      Preprocessing image stacks to be used in ZephIR
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • Dual-Color-Image-Processing

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • CeNDeR

      Public
      Processing pipeline, dataset, human annotation and proofreading toolkit for “Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans”
      Jupyter Notebook
      •
      MIT License
      •0•20•0•0•Updated Aug 11, 2023Aug 11, 2023

    • OptoSwim

      Public
      1•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • Online-Zebrafish-Optogenetic-System

      Public
      Source code of online optogenetic system in "All-optical interrogation of brain-wide activity in freely swimming larval zebrafish"
      C
      •0•1•0•0•Updated Jun 5, 2023Jun 5, 2023

    • Larval-Zebrafish-Tracking

      Public
      C
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • worm-utility-toolbox

      Public
      Utility functions for processing worm data.
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated May 21, 2023May 21, 2023

    • Extract_Colbert_Yaml_File

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 5, 2023Mar 5, 2023

    • CeNDeR-annotation

      Public
      This toolkit can view and annotate whole brain imaging data.
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Aug 4, 2022Aug 4, 2022

    • freeBrain

      Public
      🧠 freeBrain provides real-time solutions for monitoring, manipulating, and modelling brain activity in a freely behaving animal. 🪱
      brain-computer-interface
      0•16•0•0•Updated Jul 3, 2022Jul 3, 2022

    • BLITZ

      Public
      Unified system code for running zebrafish operant learning experiment. Including visual stimulus generation (OpenGL), online image processing (OpenCV), video capture (Pylon) and relay control (Serial Comm).
      code-repo
      C
      •2•4•0•2•Updated Mar 7, 2022Mar 7, 2022

    • SpikingNeuralNetworks.jl

      Public
      Julia Spiking Neural Network Simulator
      Julia
      •
      Other
      •17•0•0•0•Updated Nov 14, 2020Nov 14, 2020

    • internal.mindcontrolAPI

      Public
      Interprocess C API / DLL for getting data in and out of the mindcontrol application in realtime.
      C
      •1•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • InterProcess

      Public
      A compact C library to share data between processes on Windows. Fast. Simple
      C
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • OASIS_matlab

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Sep 4, 2020Sep 4, 2020

    • Worm-Motor-Sequence-Generation

      Public
      MATLAB
      •
      MIT License
      •4•2•0•0•Updated Sep 3, 2020Sep 3, 2020

    • worm-centerline-extraction

      Public
      extract worm centerline
      MATLAB
      •0•0•0•0•Updated Jul 17, 2020Jul 17, 2020

    • FastLZeroSpikeInference

      Public
      Fast Exact Spike Inference Via L0 Optimization
      C++
      •19•0•0•0•Updated Jun 10, 2020Jun 10, 2020

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •370•0•0•0•Updated Mar 7, 2020Mar 7, 2020

    • Lab-Communication

      Public
      For discussions and comments across groups.
      0•1•1•0•Updated Jan 16, 2020Jan 16, 2020