Repositories list

• circadian_notebooks_updated

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• circadian_notebooks

  Public
  Jupyter Notebook

  •2•3•0•1•Updated Jan 21, 2025Jan 21, 2025

• Termination_project

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• snRNA-Hormone

  Public
  code for snRNA-Hormone

  Jupyter Notebook

  •0•1•0•0•Updated Feb 20, 2024Feb 20, 2024

• Pore-C

  Public
  Pore-C analysis related code

  Jupyter Notebook

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• sc_medicago

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Aug 31, 2023Aug 31, 2023

• soybean_sn_st

  Public
  Jupyter Notebook

  •1•5•0•0•Updated Aug 23, 2023Aug 23, 2023

• FLEPSeq

  Public
  The analysis pipeline for FLEP-seq

  Jupyter Notebook

  •7•14•1•0•Updated Aug 18, 2023Aug 18, 2023

• snuupy

  Public
  single-nucleus nanopore reads processing pipeline

  Python

  •6•15•1•0•Updated Aug 16, 2023Aug 16, 2023

• snRNA-seq_microbes

  Public
  Related scripts for Comparative single-nucleus RNA-seq analysis reveals shared and distinct responses to beneficial and pathogenic microbes in roots

  Python

  •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• STAM-seq

  Public
  Single-molecule Targeted Accessibility and Methylation Sequencing

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Jul 17, 2023Jul 17, 2023

• jpy_tools

  Public
  Python

  •0•1•0•0•Updated May 9, 2023May 9, 2023

• flep_seq2_polya_analysis

  Public
  HTML

  •2•5•0•0•Updated Apr 29, 2022Apr 29, 2022

• Termination_landscape

  Public
  Landscape of Transcription Termination in Arabidopsis Revealed by Single-molecule Nascent RNA Sequencing

  nanoporeflep-seq

  Jupyter Notebook

  •0•1•0•0•Updated Oct 28, 2021Oct 28, 2021

• jbrowse2

  Public
  jbrowse2 for transcription termination data

  HTML

  •0•1•0•0•Updated Sep 17, 2021Sep 17, 2021

• Full_length_transcripts_analysis

  Public
  Computational pipeline for full-length transcripts with poly(A) tails.

  Jupyter Notebook

  •1•3•0•0•Updated Nov 26, 2020Nov 26, 2020