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    24 repositories

    • workbench

      Public
      All of Us Researcher Workbench
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •10•51•0•93•Updated Dec 18, 2024Dec 18, 2024

    • raw-data-repository

      Public
      PMI DRC data repositories and APIs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•40•0•2•Updated Dec 18, 2024Dec 18, 2024

    • healthpro

      Public
      All of Us HealthPro
      PHP
      •
      BSD 3-Clause "New" or "Revised" License
      •0•9•0•2•Updated Dec 17, 2024Dec 17, 2024

    • curation-nlp

      Public
      Curation with NLP algorithms for clinical notes
      Java
      •
      MIT License
      •0•2•0•0•Updated Dec 17, 2024Dec 17, 2024

    • data-browser

      Public
      All of Us public data browser.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•13•0•57•Updated Dec 17, 2024Dec 17, 2024

    • curation

      Public
      Python
      •
      MIT License
      •34•16•0•15•Updated Dec 12, 2024Dec 12, 2024

    • ops-data-service

      Public
      Tools for accessing the ops data api.
      Jupyter Notebook
      •2•7•0•0•Updated Oct 10, 2024Oct 10, 2024

    • workbench-terraform-modules

      Public
      HCL
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•3•Updated Sep 25, 2024Sep 25, 2024

    • aou-ehr-file-check

      Public
      Python
      •
      MIT License
      •19•13•0•0•Updated Jul 30, 2024Jul 30, 2024

    • utils

      Public
      Utility libraries and scripts used by multiple repos.
      Ruby
      •1•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • long-reads-public-codebase

      Public
      This Repo will be for the sharing of code for the long reads analysis initiative.
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Mar 24, 2024Mar 24, 2024

    • workbench-snippets

      Public
      Code snippets for use in All of Us Workbench notebooks.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •6•16•3•1•Updated May 17, 2023May 17, 2023

    • ukb-cross-analysis-demo-project

      Public
      Workbench demo project: cross-analysis of AoU and UKB.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•11•0•0•Updated May 2, 2023May 2, 2023

    • curation-vscode-integrations

      Public
      Visual Studio Code configurations for running tests and running curation within docker
      Shell
      •0•1•0•0•Updated Nov 22, 2021Nov 22, 2021

    • curation-dev-jupyter-challenge

      Public
      Simple challenge posed to potential All of Us Curation Team dev hires
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 11, 2021Oct 11, 2021

    • ImportFhirJson

      Public
      Python
      •2•0•0•0•Updated Aug 27, 2021Aug 27, 2021

    • curation-dev-challenge

      Public
      Simple challenge posed to potential All of Us Curation Team dev hires
      MIT License
      •1•0•0•0•Updated Aug 25, 2021Aug 25, 2021

    • cdrdatadictionary

      Public archive
      machine-readable files for CDR Data Dictionary updates
      Python
      •1•1•0•0•Updated Dec 7, 2020Dec 7, 2020

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •595•0•0•0•Updated Oct 19, 2020Oct 19, 2020

    • bigrquery

      Public
      Fork of bigrquery to support patches affecting Workbench user flows
      R
      •
      GNU General Public License v3.0
      •184•0•0•0•Updated Aug 18, 2020Aug 18, 2020

    • pyclient

      Public archive
      Python client for interacting with the AllOfUs workbench API.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Dec 19, 2018Dec 19, 2018

    • jupyterlab-extensions

      Public archive
      JupyterLab extensions used by All Of Us workbench.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Jun 22, 2018Jun 22, 2018

    • cdr-deid

      Public archive
      Python
      •0•0•4•0•Updated Jun 7, 2018Jun 7, 2018

    • terminology

      Public archive
      Codesystems, questionnaires, and validation tools for them, for the All of Us project.
      0•1•0•0•Updated Aug 10, 2017Aug 10, 2017