Repositories list

• Cancer-Alterome

  Public
  Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.

  Python

  •2•2•0•0•Updated Mar 5, 2024Mar 5, 2024

• BLAH8-LLM-for-Rice-GARE

  Public
  Bioregulatory Event Extraction using Large Language Models: A Case Study of Rice Literature

  Python

  •1•2•0•0•Updated Feb 27, 2024Feb 27, 2024

• PheSeq

  Public
  PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

  Python

  •

  Apache License 2.0

  •2•2•0•0•Updated Feb 6, 2024Feb 6, 2024

• BERT-CRF-for-BioNLP-OST2019-AGAC-Task1

  Public
  AGAC-BioNL-OST2009-Task1 BERT+CRF (Ongoing)

  Python

  •6•1•0•0•Updated Jan 12, 2024Jan 12, 2024

• Rice-Trait-Ontology

  Public
  Rice Trait Ontology (RTO)

  1•0•0•0•Updated May 1, 2023May 1, 2023

• enrRiceTrait

  Public
  Rice Trait Enrichment

  Python

  •1•0•0•0•Updated May 1, 2023May 1, 2023

• AD-LitPathoNet

  Public
  Text-mined knowledgebase for AD pathology mechanism investigation

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 6, 2023Mar 6, 2023

• Tutorial-4-nltk-basic

  Public
  Python

  •0•0•0•0•Updated Nov 23, 2022Nov 23, 2022

• MaximumEntroy4Classification

  Public
  Teaching codes for ME

  Python

  •0•1•0•0•Updated Nov 9, 2022Nov 9, 2022

• DGGAT

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Oct 30, 2022Oct 30, 2022

• EMFAS

  Public
  Evidence-augmented Generative Model with Fine-grained weAk Labels (EMFAS) Model for Gene-Disease Association Discovery

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated May 5, 2022May 5, 2022

• BERT-for-BioNLP-OST2019-AGAC-Task2

  Public
  BERT-for-BioNLP-OST2019-AGAC-Task2

  Python

  •3•1•0•0•Updated Mar 22, 2022Mar 22, 2022

• LSTM_CRF_useAGAC

  Public
  Python

  •0•0•0•0•Updated Mar 22, 2022Mar 22, 2022

• JDHMT

  Public
  JDHMT:

  1•1•0•0•Updated Aug 3, 2021Aug 3, 2021

• Embedding-experiment-in-BioNLP-course

  Public
  Embedding experiment in BioNLP course

  Python

  •3•0•0•0•Updated May 19, 2021May 19, 2021

• 2021Spring_CRF_AGACtask1

  Public
  Python

  •2•0•0•0•Updated Apr 27, 2021Apr 27, 2021

• Tutorial4HPOEnrichment

  Public
  0•0•0•0•Updated Apr 9, 2021Apr 9, 2021

• Tutorial_4_GO_Enrichment

  Public
  R

  •0•0•0•0•Updated Apr 9, 2021Apr 9, 2021

• Tutorial_4_CRF

  Public
  This is a tutorial for the usage of Wapiti which works for CRF implementation. The tutorial is prepared by @KaiyinZhou.

  1•1•0•0•Updated Apr 5, 2021Apr 5, 2021

• Tutorial4WordCloud-Basic

  Public
  Tutorial for WordCloud

  R

  •0•0•0•0•Updated Apr 5, 2021Apr 5, 2021

• RiceTraitOntology

  Public
  Trait Ontology Mapping

  3•1•0•0•Updated Mar 29, 2021Mar 29, 2021

• Tutorial_4_word2vec

  Public
  Tutorial for word2vec coding.

  Python

  •1•1•0•0•Updated Nov 19, 2020Nov 19, 2020

• Tutorial_4_TFIDF

  Public
  Python

  •1•1•0•0•Updated Oct 8, 2020Oct 8, 2020

• BioNLP-Corpus

  Public
  Repository used to collect biomedical corpus on the Internet!

  corpusbiomedicalbionlp

  9•31•0•0•Updated Sep 24, 2020Sep 24, 2020

• Alzheimer_disease

  Public
  0•0•0•0•Updated Mar 9, 2020Mar 9, 2020

• Gene-Function-Disease-Repository

  Public
  0•1•0•0•Updated Jan 18, 2020Jan 18, 2020

• Gene_Disease_Network

  Public
  MIT License

  •0•1•0•0•Updated Jan 17, 2020Jan 17, 2020

• 84cancers

  Public
  0•0•0•0•Updated Jan 2, 2020Jan 2, 2020

• tutorial4dependencytree

  Public
  Tutorial_4_Dependency_tree

  0•0•0•0•Updated Apr 4, 2019Apr 4, 2019

• bionlp-hzau.github.io

  Public
  0•1•0•0•Updated Mar 26, 2019Mar 26, 2019