bionlproc

All

18 repositories

end-to-end-ChemProt
Public
End-to-End Models for Chemical–Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies
Python
•
MIT License
•1•4•0•0•Updated Apr 3, 2023Apr 3, 2023
end-to-end-CombDrugExt
Public
Python
•1•4•0•0•Updated Apr 1, 2023Apr 1, 2023
twitter-covid-QA-extraction
Public
COVID-19 event extraction from Twitter via extractive question answering
Python
•1•2•0•0•Updated Mar 21, 2023Mar 21, 2023
BERT-CRel-Embeddings
Public
BMET: Improved Biomedical Word Embeddings
C++
•2•4•0•0•Updated Dec 29, 2020Dec 29, 2020
text-summ-for-doc-retrieval
Public
Neural text summarization for document retrieval
Python
•2•0•0•0•Updated Sep 28, 2020Sep 28, 2020
gcn_ddi
Public
Attention-Gated Graph Convolutions for Extracting Drug Interaction Information From Drug Labels
Python
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MIT License
•0•1•0•0•Updated Aug 18, 2020Aug 18, 2020
nmf-repoDB-benchmarking
Public
RepoDB benchmarking subsets for drug repositioning (AMIA 2019)
drug-repurposing
0•1•0•0•Updated Jul 1, 2019Jul 1, 2019
multi-label-zero-shot
Public
Few- and Zero-shot Multi-Label Learning for Structured Label Spaces
python machine-learning natural-language-processing theano biomedical-informatics
Python
•12•20•0•0•Updated Aug 27, 2018Aug 27, 2018
med-match-cnn
Public
Implementation of our matching network CNN
python machine-learning natural-language-processing neural-network biomedical-informatics
Python
•2•1•0•0•Updated Aug 16, 2018Aug 16, 2018
adversarial-relation-classification
Public
Unsupervised domain adaptation method for relation extraction
Python
•9•5•0•0•Updated Aug 15, 2018Aug 15, 2018
biocppi_extraction
Public
An end-to-end system for extracting protein-protein interactions affected by a genetic mutation.
Python
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MIT License
•2•2•0•0•Updated Mar 2, 2018Mar 2, 2018
SMM4H
Public
A supervised framework for identifying ADR mentions and classifying medication intake messages on Twitter.
Python
•1•0•0•0•Updated Jan 25, 2018Jan 25, 2018
uknlp_adr_mention_norm
Public
A deep neural model for concept normalization of adverse drug reaction (ADR) mentions.
Python
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MIT License
•4•0•0•0•Updated Jan 24, 2018Jan 24, 2018
autumn_ner
Public
A standalone deep neural network-based NER system.
Python
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MIT License
•2•2•0•0•Updated Oct 31, 2017Oct 31, 2017
relation-extraction-char-rnn
Public
Bi-direction LSTM model for relation extraction with word representations composed by character-LSTM
Python
•
MIT License
•3•1•0•0•Updated Oct 31, 2017Oct 31, 2017
pymetamap
Public
Python wraper for MetaMap
python named-entity-recognition
Python
•62•1•0•0•Updated Oct 28, 2017Oct 28, 2017
relation-extraction-rnn
Public
Bi-directional LSTM model for relation extraction
nlp machine-learning relation-extraction
Python
•10•0•0•0•Updated Oct 23, 2017Oct 23, 2017
bio-cnn
Public
Implementation of a standard CNN for text classification with deep and wide and ordinal extensions
nlp machine-learning deep-learning
Python
•4•1•0•0•Updated Oct 20, 2017Oct 20, 2017