Repositories list

• jannovar

  Public
  Annotation of VCF variants with functional impact and from databases (executable+library)

  bioinformaticsvcfvariant-annotation+ 1variant-filtration

  Java

  •

  Other

  •35•58•32•1•Updated Oct 7, 2024Oct 7, 2024

• Q

  Public
  Q ChIP-seq peak caller

  C++

  •

  Other

  •3•17•1•0•Updated Jul 17, 2024Jul 17, 2024

• asdpex

  Public
  Java

  •

  Other

  •2•7•1•4•Updated Dec 2, 2022Dec 2, 2022

• charite.github.io

  Public
  Charité Computational Biology Website

  CSS

  •

  GNU General Public License v2.0

  •8•5•0•0•Updated Jan 15, 2019Jan 15, 2019

• hyperSMURF

  Public
  Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

  Java

  •

  GNU General Public License v3.0

  •4•2•0•0•Updated Dec 16, 2017Dec 16, 2017

• topodombar

  Public
  Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries

  Python

  •

  BSD 2-Clause "Simplified" License

  •4•1•0•0•Updated Nov 8, 2017Nov 8, 2017

• hyperSMURF-tutorial

  Public
  Tutorial how you can the hyperSMURF algorithm in your Java application

  Java

  •1•0•0•0•Updated Apr 24, 2017Apr 24, 2017

• weka-GWAVA

  Public
  Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 16, 2016Aug 16, 2016

• chipseqknime

  Public
  KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/

  CSS

  •0•0•0•0•Updated Mar 29, 2016Mar 29, 2016

• jannovar_tutorial

  Public archive
  Jannovar Tutorial Applications

  Java

  •1•1•2•1•Updated May 27, 2015May 27, 2015

• jannovar_example_app

  Public archive
  Minimal Maven application using Jannovar

  Java

  •0•1•0•0•Updated May 26, 2015May 26, 2015

• denovocaller

  Public
  Denovo Variation Caller for simple familie trios (mother, father, affected child)

  Java

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Jan 16, 2015Jan 16, 2015

• ngspipeline

  Public
  Our NGS Pipeline using Nextflow

  BSD 3-Clause "New" or "Revised" License

  •3•7•0•0•Updated Dec 9, 2014Dec 9, 2014