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    104 repositories

    • faersdbstats

      Public
      Generate safety signal statistics from FDA FAERS data
      Shell
      •
      Apache License 2.0
      •31•5•6•0•Updated Dec 20, 2024Dec 20, 2024

    • Geri-DL

      Public
      Deep learning for predicting clinical events in frail elderly
      Jupyter Notebook
      •3•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • ddi-cds

      Public
      All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects
      Java
      •0•4•2•14•Updated Nov 13, 2024Nov 13, 2024

    • search-ui

      Public
      JavaScript
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • search-adaptor

      Public
      An adaptor used to create application, domain specific RESTful web service against Elasticsearch
      Python
      •
      MIT License
      •1•0•0•1•Updated Nov 12, 2024Nov 12, 2024

    • word2vec-service

      Public
      Google word2vec as a service
      Python
      •
      MIT License
      •4•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • cdss-testing-harness

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • browserfy-cql-exec-vsac

      Public
      A VSAC-enabled code service for the JavaScript CQL Execution project
      JavaScript
      •
      Apache License 2.0
      •7•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • ClinicalTransformerNER

      Public
      a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
      Python
      •
      MIT License
      •29•0•0•0•Updated May 11, 2024May 11, 2024

    • SDoH_SODA

      Public
      Python
      •
      MIT License
      •4•0•0•0•Updated May 3, 2024May 3, 2024

    • hades_proxy_manager

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2024Apr 28, 2024

    • SODA_Docker

      Public
      repo for pipeline development
      Python
      •1•0•0•0•Updated Apr 14, 2024Apr 14, 2024

    • sandbox-community-edition

      Public
      Repository for the free community edition of the sandbox
      Shell
      •17•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • ULTRA

      Public
      A foundation model for knowledge graph reasoning
      Python
      •
      MIT License
      •64•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • jupyterlab-limit-output

      Public
      Limit long text output for a single JupyterLab mime render.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • FOLIO

      Public
      Creative Commons Attribution Share Alike 4.0 International
      •9•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • prontoqa

      Public
      Synthetic question-answering dataset to formally analyze the chain-of-thought output of large language models on a reasoning task.
      Python
      •
      Apache License 2.0
      •13•0•0•0•Updated Oct 21, 2023Oct 21, 2023

    • np-terminology-imports

      Public
      A natural product terminology that maps botanical natural product Latin binomials to chemical constituents (e.g., metabolites), common names, and spelling variations. The vocabulary is represented using the OMOP vocabulary schema but is not dependent on OMOP/OHDSI tools.
      Python
      •
      Apache License 2.0
      •0•2•2•0•Updated Oct 15, 2023Oct 15, 2023

    • rio-programs-strategic-initiatives

      Public
      Repository for tracking RIO and Strategic Initiatives - Jonathan and Kay
      0•0•1•0•Updated Aug 1, 2023Aug 1, 2023

    • np_name_finder

      Public
      A project to use different computational approaches to identify natural product mentions in unstructured character strings.
      cosine-similarityfuzzy-string-matchingranking-algorithm
      Jupyter Notebook
      •
      Apache License 2.0
      •1•2•0•0•Updated Jul 21, 2023Jul 21, 2023

    • pddi-cds-vscode-validation

      Public
      A project that validates PDDI CDS rules written in CQL using a VS Code environment
      Liquid
      •
      Other
      •1•0•2•0•Updated Jul 12, 2023Jul 12, 2023

    • ACT-Network

      Public
      ACT - Accrual to Clinical Trials Network Repository
      data-stewardsdata-curatorssystem-administrators
      HTML
      •2•3•41•4•Updated Apr 12, 2023Apr 12, 2023

    • mBiasPrevention

      Public
      R
      •0•1•0•0•Updated Mar 22, 2023Mar 22, 2023

    • cqf-ruler

      Public
      CQL Measure Processing Component
      Java
      •
      Apache License 2.0
      •49•0•0•0•Updated Jan 14, 2023Jan 14, 2023

    • UMLS-Graph

      Public
      UMLS Graph database for semantic queries
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•20•3•0•Updated Jan 11, 2023Jan 11, 2023

    • path-redcap-to-cdm

      Public
      TSQL
      •0•0•2•1•Updated Dec 26, 2022Dec 26, 2022

    • data_distillery

      Public
      Repo for the University of Pittsburgh/HuBMAP part of the CFDE Data Distillery. The repo is primarily to track issues or requests.
      0•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • ocelot

      Public
      Ocelot - obtain census tract and Walk Score data (walk, bike, and transit scores) based on geocoordinates
      Python
      •
      MIT License
      •0•1•0•0•Updated Nov 22, 2022Nov 22, 2022

    • NotesFromElasticSearchIndex

      Public
      Jupyter notebook that extracts note text from an Elastic Search index
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • RCTMethodologyIE

      Public
      Models to extract methodological characteristics from Randomized Controlled Trial
      Jupyter Notebook
      •1•0•0•0•Updated Nov 9, 2022Nov 9, 2022