Repositories list

• odifmap

  Public
  A Python library for segmentation and classification of objects in microscopy images

  pythonbioinformaticsimage-analysis+ 5microscopyhistologyimmunofluorescenceclassificationsegmentation

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•1•1•0•Updated Jan 26, 2021Jan 26, 2021

• lungmap-pipeline

  Public
  Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images

  pythonbioinformaticsimage-processing+ 3immunofluorescenceclassificationsegmentation

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•1•Updated Nov 29, 2020Nov 29, 2020

• lungmap-image-data

  Public
  Selected data sets of LungMAP images for the development of analysis pipelines

  Python

  •2•0•2•1•Updated Jun 4, 2019Jun 4, 2019

• lung_ontology

  Public
  Jupyter Notebook

  •1•0•0•0•Updated May 21, 2019May 21, 2019

• lungmap-utils

  Public
  Python utilities for interacting with LungMap.net APIs

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated May 14, 2019May 14, 2019

• classification-testing

  Public
  Python

  •0•0•0•0•Updated May 2, 2019May 2, 2019

• segmentation-testing

  Public
  Comparison of segmentation routines for LungMap images

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•1•0•Updated May 2, 2019May 2, 2019

• ihc-image-analysis

  Public
  A web application for analyzing immunohistochemistry images

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•0•6•0•Updated Apr 12, 2019Apr 12, 2019

• dlt-scratch

  Public
  A junk drawer of tools, utilities, ideas, or anything useful for analyzing the lung map images

  Jupyter Notebook

  •1•0•0•0•Updated Feb 28, 2019Feb 28, 2019