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    • Miscellaneous files for test purposes
      Jupyter Notebook
      21376Updated Dec 5, 2024Dec 5, 2024
    • EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.
      Shell
      Creative Commons Attribution Share Alike 4.0 International
      5812119731Updated Dec 4, 2024Dec 4, 2024
    • Static EDAM website
      HTML
      Creative Commons Attribution Share Alike 4.0 International
      4083Updated Oct 30, 2024Oct 30, 2024
    • Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
      Shell
      Creative Commons Attribution Share Alike 4.0 International
      810182Updated Oct 30, 2024Oct 30, 2024
    • Validation tools for the EDAM ontology
      CSS
      MIT License
      3161Updated Sep 13, 2024Sep 13, 2024
    • edammap

      Public
      A tool for mapping various text input to EDAM ontology concepts
      Java
      GNU General Public License v3.0
      5910Updated Sep 2, 2024Sep 2, 2024
    • A Java command-line tool and library to download and store publications with metadata by combining content from various online resources
      Java
      GNU General Public License v3.0
      1800Updated Aug 29, 2024Aug 29, 2024
    • Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies
      JavaScript
      MIT License
      2314275Updated Jul 5, 2024Jul 5, 2024
    • Javascript library to convert EDAM to JSON/JSON-LD
      JavaScript
      MIT License
      2310Updated Jul 5, 2024Jul 5, 2024
    • edam-fu

      Public
      EDAM ontology formatting utility
      Python
      MIT License
      0000Updated Jul 4, 2024Jul 4, 2024
    • obsolete repo for the EDAM ontology website (redirects to edamontology.org)
      HTML
      1000Updated Jul 4, 2024Jul 4, 2024
    • edamxpathvalidator

      Public archive
      Verification script for the EDAM ontology
      Python
      GNU General Public License v3.0
      00151Updated Jul 4, 2024Jul 4, 2024
    • edam-geo

      Public
      Extension of EDAM towards geo- and other sciences, including Earth and planetary sciences, climate science, ecology, public health, environmental monitoring, emergency management, etc. Everyone welcome to view & comment at https://webprotege.stanford.edu/#projects/69591619-4eda-4f03-9e7f-65b213038fe1/edit/Classes (free registration needed).
      Shell
      Creative Commons Attribution Share Alike 4.0 International
      0000Updated May 31, 2024May 31, 2024
    • edam2json

      Public
      utility to export EDAM to various sorts of JSON formats (JSON-LD, bio.tools JSON)
      Python
      MIT License
      2200Updated Feb 1, 2024Feb 1, 2024
    • Documentation for EDAM.
      Makefile
      Creative Commons Attribution Share Alike 4.0 International
      31180Updated Apr 20, 2023Apr 20, 2023
    • EDAM ("Geo"), raw download from WebProtégé
      0000Updated Mar 19, 2023Mar 19, 2023
    • A Firefox & Chrome extension that displays detailed information about EDAM concepts
      JavaScript
      MIT License
      34110Updated Nov 15, 2022Nov 15, 2022
    • logoi

      Public
      Various suggestions of logoi for EDAM and related tools
      Creative Commons Attribution Share Alike 4.0 International
      5003Updated Dec 29, 2021Dec 29, 2021
    • Testing OWL tools in JupyterLab (in usegalaxy.eu)
      Jupyter Notebook
      0000Updated Aug 18, 2021Aug 18, 2021
    • Extension of the EDAM ontology for geo-related concepts, including areas of Earth and planetary sciences, climate research, ecology, public health, etc.
      Shell
      Creative Commons Attribution Share Alike 4.0 International
      0001Updated Aug 16, 2021Aug 16, 2021
    • Python
      Other
      0200Updated Aug 3, 2021Aug 3, 2021
    • Creative Commons Attribution Share Alike 4.0 International
      1012Updated May 17, 2021May 17, 2021
    • benten

      Public
      A language server for Common Workflow Language
      Python
      Apache License 2.0
      10000Updated May 11, 2021May 11, 2021
    • The EDAM ontology for bioinformatics tools and services should be come compatible with the Debtags and vice versa. This project starts out with adding EDAM references to the debtags volcabulary export file.
      2000Updated Mar 27, 2021Mar 27, 2021
    • Slides, swings, and sandbox ontology
      Shell
      Creative Commons Attribution Share Alike 4.0 International
      0000Updated Mar 7, 2021Mar 7, 2021