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@edamontology

EDAMontology

EDAMontology is an umbrella organisation for the development and maintenance of the EDAM ontology and related tools and works.

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  1. edamontology edamontology Public

    EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and da…

    Shell 121 58

  2. edam-bioimaging edam-bioimaging Public

    Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, …

    Shell 10 8

  3. edam-browser edam-browser Public

    Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

    JavaScript 14 23

  4. edam-popovers edam-popovers Public

    A Firefox & Chrome extension that displays detailed information about EDAM concepts

    JavaScript 4 3

  5. edamontologyDocs edamontologyDocs Public

    Documentation for EDAM.

    Makefile 1 3

  6. edammap edammap Public

    A tool for mapping various text input to EDAM ontology concepts

    Java 9 5

Repositories

Showing 10 of 25 repositories
  • edamontology Public

    EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.

    edamontology/edamontology’s past year of commit activity
    Shell 121 CC-BY-SA-4.0 58 196 (16 issues need help) 31 Updated Dec 4, 2024
  • edamontology.org Public

    Static EDAM website

    edamontology/edamontology.org’s past year of commit activity
    HTML 0 CC-BY-SA-4.0 4 8 (1 issue needs help) 3 Updated Oct 30, 2024
  • edam-bioimaging Public

    Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..

    edamontology/edam-bioimaging’s past year of commit activity
    Shell 10 CC-BY-SA-4.0 8 18 (3 issues need help) 2 Updated Oct 30, 2024
  • caseologue Public

    Validation tools for the EDAM ontology

    edamontology/caseologue’s past year of commit activity
    CSS 1 MIT 3 6 (2 issues need help) 1 Updated Sep 13, 2024
  • edammap Public

    A tool for mapping various text input to EDAM ontology concepts

    edamontology/edammap’s past year of commit activity
    Java 9 GPL-3.0 5 1 0 Updated Sep 2, 2024
  • pubfetcher Public

    A Java command-line tool and library to download and store publications with metadata by combining content from various online resources

    edamontology/pubfetcher’s past year of commit activity
    Java 8 GPL-3.0 1 0 0 Updated Aug 29, 2024
  • edam-sandbox Public

    Miscellaneous files for test purposes

    edamontology/edam-sandbox’s past year of commit activity
    Jupyter Notebook 1 2 37 (1 issue needs help) 6 Updated Jul 6, 2024
  • edam-browser Public

    Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies

    edamontology/edam-browser’s past year of commit activity
    JavaScript 14 MIT 23 27 (3 issues need help) 5 Updated Jul 5, 2024
  • edam2json-js Public

    Javascript library to convert EDAM to JSON/JSON-LD

    edamontology/edam2json-js’s past year of commit activity
    JavaScript 3 MIT 2 1 0 Updated Jul 5, 2024
  • edam-fu Public

    EDAM ontology formatting utility

    edamontology/edam-fu’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 4, 2024
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