Repositories list

• sandbox

  Public
  Meeting notes, vignettes, tutorials, and demos for general group use.

  R

  •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• EmergenceOfNY10

  Public
  Python

  •1•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• pak-coinfection

  Public
  FMDV co-infection and recombination in Asian water buffalo

  R

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• GeoAI-Flavivirus

  Public
  Python

  •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• challengeABM

  Public
  Agent Based Model (ABM) simulating transmission and within-host virus dynamics during a challenge experiment.

  R

  •0•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• phylo-tutorial

  Public
  Code and exercises for phylogenetics in R.

  HTML

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• geoepi.github.io

  Public
  GeoEpi Landing Page

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• seir-vector

  Public
  R

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Aug 18, 2024Aug 18, 2024

• vs-epizootics

  Public
  Spatiotemporal analysis of U.S. Vesicular stomatitis outbreak (2014-2016)

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

• fmdv-preclinical

  Public
  Analysis of FMDV preclinical transmission study in bovine

  R

  •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

• .github

  Public
  JavaScript

  •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

• Notebook

  Public
  GeoEpi Research Notebook

  SCSS

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• vesstosim

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• WNV-genomics

  Public
  R

  •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024