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    51 repositories

    • gigadb-website

      Public
      Source code for running GigaDB
      PHP
      •
      GNU General Public License v3.0
      •15•9•803•80•Updated Oct 12, 2024Oct 12, 2024

    • gigascience.github.io

      Public
      CSS
      •5•1•0•1•Updated Sep 5, 2024Sep 5, 2024

    • techteam

      Public
      Ruby
      •
      GNU Lesser General Public License v3.0
      •2•0•0•1•Updated Mar 19, 2024Mar 19, 2024

    • galaxy-allpaths

      Public
      A Galaxy wrapper to return bacterial genome assemblies made by ALL-PATHS presented in Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 2012, 1:18
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 24, 2023Dec 24, 2023

    • paper-luo2012

      Public
      Genome assembly pipelines from Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18
      Perl
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 24, 2023Dec 24, 2023

    • Wing_Biometrics_2015

      Public
      Source code from Sonnenschein et al., (2015) An image database of Drosophila melanogaster wings for phenomic and biometric analysis. GigaScience 4:25
      R
      •5•0•0•0•Updated Dec 24, 2023Dec 24, 2023

    • SOAPdenovo2

      Public
      Source code for SOAPdenovo2 from Luo et al., (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18
      C
      •
      GNU General Public License v3.0
      •78•0•0•0•Updated Dec 24, 2023Dec 24, 2023

    • smilefinder

      Public
      Source code from Guiblet et al., (2014) SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations. GigaScience 2015, 4:1
      Python
      •3•0•0•0•Updated Dec 24, 2023Dec 24, 2023

    • paper-alnasir2015

      Public
      Source code from Al-Nasir and Shanahan, (2015) Investigation into the annotation of protocol sequencing steps in the Sequence Read Archive. GigaScience 4:23
      GNU Lesser General Public License v3.0
      •1•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • gage

      Public
      An archive of the code used for evaluating assemblies from GAGE.
      Java
      •1•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • bgi-soap2

      Public
      Source code and binaries for the SOAP2 alignment tool developed by BGI.
      C
      •5•7•0•0•Updated Dec 22, 2023Dec 22, 2023

    • bgi-soap1

      Public
      Source code and binaries for the SOAP1 alignment tool developed by BGI.
      C++
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • paper-kilianski2015

      Public
      Source code for Kilianski et al., (2015) Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer. GigaScience 4:12
      Shell
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Dec 21, 2023Dec 21, 2023

    • paper-zaritsky2015

      Public
      Source code from Zaritsky et al., (2015) Live time-lapse dataset of in vitro wound healing experiments. GigaScience 4:8
      MATLAB
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Dec 21, 2023Dec 21, 2023

    • gigadb-cogini-old

      Public
      Source code for GigaDB version 2.
      PHP
      •
      Other
      •2•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • paper-zhang2014

      Public
      Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26
      Perl
      •
      GNU General Public License v3.0
      •25•35•0•0•Updated Dec 21, 2023Dec 21, 2023

    • gigadb-cogini-api

      Public
      1•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • galaxy-datasource-gigadb

      Public
      Provides access to GigaDB from GigaGalaxy
      1•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • galaxy-tools-assemblathon1

      Public
      Perl
      •1•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • galaxy-tools-contiguator

      Public
      Shell
      •1•1•0•0•Updated Dec 21, 2023Dec 21, 2023

    • papers

      Public
      9•7•0•0•Updated Dec 21, 2023Dec 21, 2023

    • gigadb-tools-dataupload

      Public
      Java
      •3•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • gigadb-wordpress

      Public
      Source code for the WordPress-based version (1) of GigaDB.
      PHP
      •1•1•0•0•Updated Dec 21, 2023Dec 21, 2023

    • gigadb-hkust

      Public
      Experimental website created by HKUST project students
      Java
      •1•1•0•0•Updated Dec 21, 2023Dec 21, 2023

    • cms

      Public
      CMS software for GigaScience
      Twig
      •3•1•8•3•Updated Dec 20, 2023Dec 20, 2023

    • ExceltoGigaDB

      Public
      Convert excel spreadsheet to sql file into GigaDB database
      Java
      •5•0•0•0•Updated Dec 20, 2023Dec 20, 2023

    • paper-bray2017

      Public
      Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay.
      Shell
      •16•35•1•0•Updated Dec 20, 2023Dec 20, 2023

    • gigablog

      Public
      Source code for running the WordPress GigaBlog website
      PHP
      •
      GNU General Public License v2.0
      •1•0•4•0•Updated Dec 20, 2023Dec 20, 2023

    • gigabyte-website

      Public
      Landing page for gigabytejournal.com
      GNU Lesser General Public License v3.0
      •2•0•0•0•Updated Dec 20, 2023Dec 20, 2023

    • cuddel-gsk-dataset

      Public
      Reproducibility study on a metabolomics dataset
      R
      •4•3•1•0•Updated Dec 20, 2023Dec 20, 2023