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    30 repositories

    • i2b2transmart-quick-start

      Public
      Python
      •
      Apache License 2.0
      •2•6•3•0•Updated Mar 9, 2020Mar 9, 2020

    • transmart

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work. http://transmartfoundation.org/
      Java
      •3•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • transmartApp

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
      JavaScript
      •
      GNU General Public License v3.0
      •74•2•0•0•Updated Jun 11, 2019Jun 11, 2019

    • transmart-fractalis

      Public
      Integration plugin of Fractalis into i2b2-transmart
      Groovy
      •0•1•1•0•Updated Jun 6, 2019Jun 6, 2019

    • transmart-core-db

      Public
      TranSMART Core
      Groovy
      •
      GNU General Public License v3.0
      •30•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • pic-sure-i2b2-transmart

      Public
      A docker-compose orchestrated research infrastructure powered by PIC-SURE and i2b2/tranSMART. This serves as a reference implementation for use in production environments where the databases reside off the application server.
      Groovy
      •
      Apache License 2.0
      •3•1•0•0•Updated May 16, 2019May 16, 2019

    • transmart-shared

      Public
      Groovy
      •0•0•0•1•Updated May 2, 2019May 2, 2019

    • spring-security-auth0

      Public
      Groovy
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • transmart-metacore-plugin

      Public
      The tranSMART plugin Metacore
      Groovy
      •6•0•0•0•Updated Sep 13, 2018Sep 13, 2018

    • transmart-gnome

      Public
      Groovy
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 13, 2018Sep 13, 2018

    • transmart-custom

      Public
      Groovy
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 12, 2018Sep 12, 2018

    • Rmodules

      Public
      A R statistical analysis module plugin for tranSMART
      Groovy
      •
      Other
      •34•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • dalliance-plugin

      Public
      JavaScript
      •4•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • transmart-data

      Public
      Tools for managing tranSMART's database
      PLSQL
      •
      GNU General Public License v3.0
      •46•0•0•1•Updated Jul 31, 2018Jul 31, 2018

    • transmart-xnat-viewer

      Public
      Connector to link tranSMART to an XNAT server
      JavaScript
      •6•0•0•0•Updated Jun 26, 2018Jun 26, 2018

    • biomart-domain

      Public
      Groovy
      •0•0•0•0•Updated May 30, 2018May 30, 2018

    • transmart-core-db-tests

      Public
      Groovy
      •0•0•0•0•Updated May 30, 2018May 30, 2018

    • search-domain

      Public
      Groovy
      •0•0•0•0•Updated May 30, 2018May 30, 2018

    • folder-management-plugin

      Public
      The transmart (and grails) plugin that contains the folder-management elements.
      Groovy
      •17•0•0•0•Updated May 30, 2018May 30, 2018

    • i2b2-core-server

      Public
      i2b2 server source code
      Java
      •40•0•0•0•Updated May 16, 2018May 16, 2018

    • transmart-legacy-db

      Public
      Contains the Grails domain declarations of the legacy transmart schema
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Apr 25, 2018Apr 25, 2018

    • transmart-gwas-plugin

      Public
      The transmart (and grails) plugin that contains the GWAS elements.
      PLSQL
      •14•0•0•0•Updated Apr 23, 2018Apr 23, 2018

    • transmart-rest-api

      Public
      HTTP available tranSMART RESTful API
      Groovy
      •
      Other
      •12•0•0•0•Updated Apr 23, 2018Apr 23, 2018

    • transmart-java

      Public
      Java
      •0•0•0•0•Updated Apr 23, 2018Apr 23, 2018

    • transmart-mydas

      Public
      Java
      •5•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • transmart-xnat-importer-plugin

      Public
      Groovy
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 7, 2018Apr 7, 2018

    • transmart-core-api

      Public
      Groovy
      •
      GNU General Public License v3.0
      •15•0•0•0•Updated Apr 1, 2018Apr 1, 2018

    • blend4j-plugin

      Public
      blend4j-plugin is a grails plugin to access galaxy.
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 29, 2018Mar 29, 2018

    • transmart-extensions

      Public
      Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
      10•0•0•0•Updated Mar 27, 2018Mar 27, 2018

    • tranSMART-ETL

      Public
      tranSMART ETL pipelines and configurations
      Groovy
      •26•0•0•0•Updated Mar 14, 2017Mar 14, 2017