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    19 repositories

    • pipenn

      Public
      HTML
      •
      GNU General Public License v3.0
      •3•11•0•0•Updated Nov 14, 2024Nov 14, 2024

    • scmra

      Public
      scMRA python module
      Python
      •0•2•0•0•Updated Oct 21, 2024Oct 21, 2024

    • ExtracellularVesicles

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Jan 31, 2024Jan 31, 2024

    • FTD_PRODIA

      Public
      Analysis of proteomics data of FTD subtypes
      R
      •
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • hbp

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • amyloid_hydrophobicity

      Public
      Data and scripts to generate the figures in the manuscript on the hydrophobic temperature dependence of amyloid fibril formation.
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Aug 3, 2023Aug 3, 2023

    • hydrophobic_patches

      Public
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•10•1•0•Updated Aug 3, 2023Aug 3, 2023

    • nanoplastics

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

    • Tumor_Break_Load

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • Docker-tool-images

      Public
      0•0•0•0•Updated Jun 24, 2022Jun 24, 2022

    • protein-glue

      Public
      Accompanying code for the ProteinGLUE method
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•11•1•0•Updated Apr 12, 2022Apr 12, 2022

    • ComDYN

      Public
      Scripts to create ComDYN 'Common Constrains Dynamics' elastic network for use with the MARTINI coarse-grained forcefield (and any other elastic network application) for when large conformational changes need to be sampled
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • multi-task-PPI

      Public
      Python
      •3•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • MA-PRALINE

      Public
      Motif-Aware PRALINE: a motif-aware multiple sequence alignment tool
      Python
      •
      GNU General Public License v2.0
      •0•2•1•0•Updated Aug 27, 2019Aug 27, 2019

    • PRALINE

      Public
      Next-generation PRALINE sequence alignment program.
      Python
      •
      GNU General Public License v2.0
      •0•9•1•0•Updated Mar 31, 2019Mar 31, 2019

    • MA-PRALINE-extras

      Public
      Analysis notebooks and other support code used in the MA-PRALINE article.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • whole-genome-tool

      Public
      Python
      •1•0•0•0•Updated Jun 11, 2018Jun 11, 2018

    • metaModules-Galaxy-Workflow

      Public
      A Galaxy workflow for metaModules (Ali May et al, 2016), which is a recently developed metatranscriptomics computational workflow to automate identification of key functional differences between health- and disease-associated microbiomes
      R
      •0•0•0•0•Updated Jun 19, 2017Jun 19, 2017

    • B4TM-Galaxy-2017

      Public
      Everything about Galaxy assignment of B4TM: instructions, scripts, files and papers. This assignment served as an evaluation of the tutorial for metaModules Galaxy workflow.
      galaxybt4m
      R
      •2•0•0•0•Updated May 11, 2017May 11, 2017