Immcantation
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dowser
Publicchangeo
PublicChangeo-O is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). Change-O provides tools for processing the output of V(D)J alignment tools, assigning clonal clusters, and reconstructing germline sequences.presto
PublicpRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.immcantation
Publicshazam
PublicSHazaM is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides tools for advanced analysis of somatic hypermutation (SHM) in immunoglobulin (Ig) sequences.scoper
PublicSCOPer is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). SCOPer provides a computational framework for the identification of B cell clonal relationships from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data.alakazam
PublicAlakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.users-meeting
Publicigphyml
PublicIgPhyML is a phylogenetic inference package for B cell repertoires. It implements codon substitution models designed that incorporate unique features of somatic hypermutation and allow for parameter estimation across lineages to characterize entire repertoires.tigger
PublicTIgGER is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides tools to infer the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq).enchantr
PublicenchantR provides additional quality control and reporting functions for other R packages in the Immcantation framework and is part of the magic behind nf-co.re/airrflow, a start-to-finish Nextflow pipeline to analyze AIRR-seq data.prestor
Publicamulety
Publicbcellmagic
Publicimmcantation-lab
Public