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    162 repositories

    • slack-aws-status

      Public
      Slack app for reporting AWS account status
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • PCAII_Atlas_2025

      Public
      project 16 Pre-cancer Atlas second publication data index
      MIT License
      •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • ome-tiff-pyramid-tools

      Public
      Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
      Python
      •
      MIT License
      •9•14•0•1•Updated Mar 26, 2025Mar 26, 2025

    • scimap

      Public
      Spatial Single-Cell Analysis Toolkit
      pythonspatial-analysisimage-analysissingle-cell-analysispypi
      Python
      •
      MIT License
      •30•87•42•2•Updated Mar 24, 2025Mar 24, 2025

    • minerva-author

      Public
      Tool to create images and configuration files for Minerva-Story
      Python
      •
      MIT License
      •15•16•19•1•Updated Mar 21, 2025Mar 21, 2025

    • ad-rna-editing

      Public
      R
      •1•0•0•0•Updated Mar 21, 2025Mar 21, 2025

    • ad-personalized

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • minerva-author-ui

      Public
      Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.
      microscopyomeminervaimmunofluorescence
      JavaScript
      •
      MIT License
      •5•4•2•4•Updated Mar 17, 2025Mar 17, 2025

    • peripheral-neuropathy

      Public
      0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • mcmicro

      Public
      Multiple-choice microscopy pipeline
      Nextflow
      •
      MIT License
      •60•125•58•2•Updated Mar 4, 2025Mar 4, 2025

    • basic-illumination

      Public
      ImageJ BaSiC shading correction for use with Ashlar
      Python
      •
      MIT License
      •10•8•2•0•Updated Mar 4, 2025Mar 4, 2025

    • mcreport

      Public
      Pathology report tool for mcmicro
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • cycif.org

      Public
      cycif.org GitHub Pages Website
      JavaScript
      •
      MIT License
      •9•2•5•4•Updated Feb 26, 2025Feb 26, 2025

    • r-indra-gsea

      Public
      R
      •
      Other
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • harvardtissueatlas

      Public
      Harvard Tissue Atlas website
      SCSS
      •5•3•2•0•Updated Feb 21, 2025Feb 21, 2025

    • ashlar

      Public
      ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
      Python
      •
      MIT License
      •44•138•55•12•Updated Feb 21, 2025Feb 21, 2025

    • omero-oauth

      Public
      OMERO.web application to allow OAuth2 login to OMERO
      Python
      •
      GNU Affero General Public License v3.0
      •4•1•0•0•Updated Feb 13, 2025Feb 13, 2025

    • stic-ms-2024

      Public
      Custom codes related to Kader, Lin, Hug manuscript 2024
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • cylinter

      Public
      An Interactive Image Segmentation Filter for Multiplex Microscopy
      Python
      •
      MIT License
      •12•29•1•1•Updated Jan 31, 2025Jan 31, 2025

    • vae-paper

      Public
      Jupyter Notebook
      •
      MIT License
      •2•2•0•0•Updated Jan 31, 2025Jan 31, 2025

    • minerva_analysis

      Public
      JavaScript
      •
      MIT License
      •7•26•22•4•Updated Jan 22, 2025Jan 22, 2025

    • incucyte_stabilizer

      Public
      Python
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • beta-segmentinator

      Public
      Python
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • paired-eval

      Public
      Fast implementation of paired eval
      Python
      •
      MIT License
      •2•0•0•0•Updated Dec 28, 2024Dec 28, 2024

    • palom

      Public
      Piecewise alignment for layers of mosaics
      Python
      •
      MIT License
      •5•23•5•1•Updated Dec 19, 2024Dec 19, 2024

    • CRC_atlas_2022

      Public
      MATLAB
      •
      MIT License
      •4•14•2•0•Updated Dec 5, 2024Dec 5, 2024

    • minerva-core-ui

      Public
      A microscopy viewer for non-experts
      TypeScript
      •
      MIT License
      •2•0•10•2•Updated Dec 4, 2024Dec 4, 2024

    • minerva-browser

      Public
      JavaScript
      •
      MIT License
      •5•5•10•3•Updated Nov 27, 2024Nov 27, 2024

    • prostate

      Public
      Analysis of prostate cancer CyCIF data
      R
      •0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

    • okl-analysis

      Public
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024