Repositories list

• molgenis-emx2

  Public
  MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

  Vue

  •

  GNU Lesser General Public License v3.0

  •16•14•248•55•Updated Oct 16, 2024Oct 16, 2024

• vip

  Public
  Variant Interpretation Pipeline

  pipelinegeneticsvariant-interpretation

  Shell

  •

  GNU Lesser General Public License v3.0

  •5•23•9•7•Updated Oct 16, 2024Oct 16, 2024

• sc-MetaBrain-consortium

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 16, 2024Oct 16, 2024

• vip-report-template

  Public
  Report template for Variant Call Format (VCF) Report generator

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•4•3•3•Updated Oct 16, 2024Oct 16, 2024

• vip-web

  Public
  Variant Interpretation Pipeline web interface

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•1•Updated Oct 16, 2024Oct 16, 2024

• vip-inheritance

  Public
  Java

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Oct 16, 2024Oct 16, 2024

• vip-inheritance-matcher

  Public
  annotates VCF samples with denovo and possible compound flags and matching inheritance modes

  Java

  •

  GNU Lesser General Public License v3.0

  •0•5•0•0•Updated Oct 16, 2024Oct 16, 2024

• vip-report

  Public
  Report generator for Variant Call Format (VCF) files

  HTML

  •

  GNU Lesser General Public License v3.0

  •0•3•3•1•Updated Oct 16, 2024Oct 16, 2024

• vip-decision-tree

  Public
  Decision tree module for the Variant Interpretation Pipeline (vip)

  Java

  •

  GNU Lesser General Public License v3.0

  •0•3•0•4•Updated Oct 16, 2024Oct 16, 2024

• vip-utils

  Public
  Shared utils and resources for VIP modules and tools

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

• molgenis-service-armadillo

  Public
  Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

  hacktoberfest

  Java

  •

  GNU Lesser General Public License v3.0

  •10•7•75•10•Updated Oct 15, 2024Oct 15, 2024

• ds-tidyverse-client

  Public
  R

  •1•1•0•1•Updated Oct 15, 2024Oct 15, 2024

• asterix

  Public
  Automated PGx pipeline

  R

  •2•2•0•2•Updated Oct 14, 2024Oct 14, 2024

• capice-resources

  Public
  Repository for resource files for CAPICE and updating CAPICE model

  Python

  •

  GNU Lesser General Public License v3.0

  •0•1•8•1•Updated Oct 14, 2024Oct 14, 2024

• molgenis-r-armadillo

  Public
  Client to manage shared files in the MOLGENIS Armadillo suite from R

  hacktoberfest

  R

  •5•3•6•0•Updated Oct 14, 2024Oct 14, 2024

• ds-tidyverse

  Public
  R

  •1•2•0•1•Updated Oct 14, 2024Oct 14, 2024

• molgenis-app-eqtlgen

  Public
  Frontend for eqtlgen paper

  HTML

  •

  GNU Lesser General Public License v3.0

  •4•0•0•4•Updated Oct 11, 2024Oct 11, 2024

• vip-report-vcf

  Public
  TypeScript VCF library with support for both reading and writing

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•2•0•1•Updated Oct 10, 2024Oct 10, 2024

• vip-report-api

  Public
  Report API for Variant Call Format (VCF) Report templates

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •0•2•0•2•Updated Oct 9, 2024Oct 9, 2024

• NGS_Automated

  Public
  Shell

  •

  GNU Lesser General Public License v3.0

  •8•4•13•1•Updated Oct 9, 2024Oct 9, 2024

• PICALO

  Public
  eQTL interaction optimization using expectation maximization

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•5•0•3•Updated Oct 8, 2024Oct 8, 2024

• projects-rd-recon4imd

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Oct 8, 2024Oct 8, 2024

• aoc-2023

  Public
  Python

  •1•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• molgenis.org

  Public
  Source code of the (new) website for MOLGENIS

  CSS

  •

  GNU Lesser General Public License v3.0

  •22•0•0•2•Updated Oct 7, 2024Oct 7, 2024

• take-it-easyconfigs

  Public
  Perl

  •8•0•0•8•Updated Oct 1, 2024Oct 1, 2024

• projects-rd-dashboards

  Public
  Vue

  •0•0•0•2•Updated Sep 27, 2024Sep 27, 2024

• molgenis-frontend-installer

  Public
  Script to install MOLGENIS frontend packages locally.

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Sep 27, 2024Sep 27, 2024

• molgenis-tools-commander

  Public
  A command line interface for MOLGENIS

  hacktoberfest

  CSS

  •

  GNU Lesser General Public License v3.0

  •8•8•16•14•Updated Sep 26, 2024Sep 26, 2024

• projects-rd-erns

  Public
  Python

  •0•0•1•2•Updated Sep 26, 2024Sep 26, 2024

• ds-workshops

  Public
  0•0•0•0•Updated Sep 24, 2024Sep 24, 2024