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    16 repositories

    • CellOracle

      Public
      This is the alpha version of the CellOracle package
      Python
      •
      Other
      •53•303•64•2•Updated Sep 9, 2024Sep 9, 2024

    • BiddyetalWorkflow

      Public
      This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
      human-cell-atlas
      R
      •11•30•1•0•Updated Jun 24, 2024Jun 24, 2024

    • adipogenesis-reproducibility-repo

      Public
      Relevant data and code for reproducing analysis of in vivo lineage tracing adipocyte precursors in skin
      Jupyter Notebook
      •0•1•0•0•Updated Jun 14, 2024Jun 14, 2024

    • CellOracle_streamlit

      Public
      Codes for celloracle web application
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

    • Colony-counter

      Public
      Python package for the quantificatin of number of colonies
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •10•16•1•0•Updated Apr 10, 2024Apr 10, 2024

    • CellOracle.documentation

      Public
      Jupyter Notebook
      •0•3•1•0•Updated Apr 2, 2024Apr 2, 2024

    • newCloneCalling

      Public
      Repository detailing updated allowlisting and clonal analysis workflow
      Python
      •0•7•1•0•Updated Oct 25, 2023Oct 25, 2023

    • CellTag-multi-2023

      Public
      Repository for scirpts to re-produce all major analyses in the CellTag-multi paper
      Jupyter Notebook
      •0•2•0•0•Updated Oct 18, 2023Oct 18, 2023

    • CellTag-Titration

      Public
      Imaging-based titration software for GFP-Celltag lentivirus
      Jupyter Notebook
      •0•0•0•0•Updated Feb 19, 2023Feb 19, 2023

    • CellTagR

      Public
      This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
      human-cell-atlas
      R
      •9•19•4•0•Updated Oct 19, 2022Oct 19, 2022

    • Capybara

      Public
      Capybara: A computational tool to measure cell identity and fate transitions
      R
      •8•56•6•0•Updated May 23, 2022May 23, 2022

    • Capybara_reproducibility

      Public
      Reproducibility Repository for Capybara
      HTML
      •0•1•2•0•Updated Mar 29, 2022Mar 29, 2022

    • CellTagViz-package

      Public
      HTML
      •
      Other
      •0•1•0•0•Updated Aug 27, 2019Aug 27, 2019

    • PreviousCloneHunter

      Public
      This repository contains our CellTag CloneHunter R package for clone-calling.
      human-cell-atlas
      R
      •2•6•1•1•Updated Jun 10, 2019Jun 10, 2019

    • CellTag-Classifier

      Public
      HTML
      •
      MIT License
      •1•6•0•0•Updated Apr 23, 2019Apr 23, 2019

    • CellTagViz

      Public
      Repository of the CellTag Viz Shiny App
      human-cell-atlas
      HTML
      •0•1•0•0•Updated Jan 31, 2019Jan 31, 2019