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    23 repositories

    • nanshe_workflow

      Public
      Provides a Jupyter workflow for running nanshe.
      Python
      •
      Apache License 2.0
      •4•3•6•12•Updated Mar 18, 2019Mar 18, 2019

    • nanshe_workflow_deploy_janelia

      Public
      Helps install and run the workflow on the Janelia Cluster.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•1•Updated Mar 10, 2019Mar 10, 2019

    • docker_nanshe_workflow

      Public
      A docker container holding the nanshe workflow and the dependencies needed to run it.
      Python
      •
      Apache License 2.0
      •3•0•2•0•Updated Mar 10, 2019Mar 10, 2019

    • docker_nanshe_notebook

      Public
      A docker container with nanshe and the Jupyter Notebook installed
      Dockerfile
      •2•0•0•0•Updated Mar 10, 2019Mar 10, 2019

    • docker_centos_conda

      Public
      For building a docker image on CentOS with miniconda installed.
      Shell
      •
      Apache License 2.0
      •2•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • nanshe

      Public
      An image processing toolkit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•6•56•10•Updated Dec 23, 2018Dec 23, 2018

    • docker_nanshe

      Public
      A repo to build a docker image with the latest working release of nanshe and its dependencies.
      Dockerfile
      •3•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • docker_centos_mirror

      Public
      A mirror for the CentOS Docker image
      Dockerfile
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 23, 2018Dec 23, 2018

    • rank_filter

      Public
      A simple python module containing an in-place linear rank filter optimized in C++.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•3•3•1•Updated Nov 2, 2018Nov 2, 2018

    • docker_centos_drmaa_conda

      Public
      For building a docker image on CentOS with Grid Engine, DRMAA, and miniconda installed.
      Shell
      •
      Apache License 2.0
      •4•0•0•0•Updated Apr 18, 2018Apr 18, 2018

    • docker_nanshe_workflow_mirror

      Public
      A simple Dockerfile to mirror the nanshe_workflow container to other Docker registries.
      Apache License 2.0
      •2•0•0•0•Updated Jan 30, 2018Jan 30, 2018

    • splauncher

      Public
      Provides simple strategies for launching jobs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jul 10, 2017Jul 10, 2017

    • nanshe-cookiecutter

      Public
      A cookiecutter template for splitting up nanshe.
      Python
      •1•0•4•1•Updated May 7, 2017May 7, 2017

    • nanshe_workflow_deploy_aws

      Public
      Helps install and run the workflow on AWS.
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Nov 22, 2016Nov 22, 2016

    • runipy

      Public
      Run IPython notebooks as command-line scripts, generate HTML reports
      Python
      •
      BSD 2-Clause "Simplified" License
      •90•0•0•0•Updated Sep 20, 2016Sep 20, 2016

    • sirara

      Public
      A Pythonic factorization module
      Python
      •
      Other
      •1•0•0•1•Updated Sep 9, 2016Sep 9, 2016

    • spams-devel

      Public
      A fork of spams ( http://spams-devel.gforge.inria.fr/ ) for GitHub
      C++
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • nanshe-build

      Public archive
      DEPRECATED: conda-forge now holds all of nanshe's dependencies.
      Shell
      •3•0•0•0•Updated Mar 14, 2016Mar 14, 2016

    • spams-python

      Public
      My fork of SPAMS ( http://spams-devel.gforge.inria.fr ) for python
      C++
      •4•0•0•0•Updated Nov 30, 2015Nov 30, 2015

    • docker_nanshe_mirror

      Public
      Simply pulls in this image ( https://github.com/nanshe-org/docker_nanshe ).
      2•0•0•0•Updated Nov 23, 2015Nov 23, 2015

    • ilastik-centos_6_3-test-vm

      Public
      Created to give a barebones VM that is similar to the Janelia cluster for building and testing purposes.
      Ruby
      •1•0•0•0•Updated Sep 21, 2015Sep 21, 2015

    • ilastik-scientific_linux_6_3-test-vm

      Public
      Created to give a barebones VM that is similar to the Janelia cluster for building and testing purposes.
      Ruby
      •1•0•0•0•Updated Sep 21, 2015Sep 21, 2015

    • nanshe-benchmarking

      Public
      Designed to begin benchmarking on nanshe. Will eventually be folded into nanshe.
      2•0•0•0•Updated Mar 5, 2015Mar 5, 2015