Repositories list

• ReefGuideAPI.jl

  Public
  API for Reef Guidance and Assessment

  Julia

  •

  MIT License

  •0•0•8•1•Updated Oct 6, 2024Oct 6, 2024

• ADRIA.jl

  Public
  ADRIA: Adaptive Dynamic Reef Intervention Algorithms. A multi-criteria decision support platform for informing reef restoration and adaptation interventions.

  Julia

  •

  MIT License

  •5•14•62•10•Updated Oct 5, 2024Oct 5, 2024

• GBR-reef-guidance-assessment

  Public
  Julia

  •0•3•1•1•Updated Oct 3, 2024Oct 3, 2024

• ssddata

  Public
  Species Sensitivity Distribution Data

  datassdspecies-sensitivity-distribution

  R

  •1•1•1•0•Updated Oct 2, 2024Oct 2, 2024

• MADAME-app

  Public
  Model Assessment and Decision Analysis for Marine Environments web application

  TypeScript

  •

  MIT License

  •0•2•0•0•Updated Oct 2, 2024Oct 2, 2024

• ereefs-visualisation-portal-static-website

  Public
  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• ssdtools

  Public
  An R package to fit and plot species sensitivity distributions.

  R

  •

  Apache License 2.0

  •16•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• EcoRRAP

  Public
  Useful scripts produced by EcoRRAP, a subprogram of the Reef Restoration and Adaptation Program (RRAP)

  Python

  •1•3•0•0•Updated Sep 26, 2024Sep 26, 2024

• MMP_WQ

  Public
  Code in support of MMP water quality revamp

  R

  •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

• ereefs-download-manager

  Public
  Java component of the AIMS eReefs Platform responsible for downloading new input files from supported data sources.

  Java

  •

  MIT License

  •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

• ssdtools_set_min_n

  Public
  This repository contains code to run a simulation study examining the minimum allowable sample size to be used for fitting species sensitivity distributions (SSDs) via ssdtools

  Apache License 2.0

  •1•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• seriatopora_analyses

  Public
  Analyses in support of a project exploring what has happened to Seriatopora within the GBR

  R

  •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• rrap-dg

  Public
  Interface to the RRAP data store and data generation processes for AIMS-RRAP

  Julia

  •

  MIT License

  •1•2•2•1•Updated Sep 11, 2024Sep 11, 2024

• CoralBlox.jl

  Public
  CoralBlox is a coral growth and mortality model that simulates distinct coral functional groups indirectly competing for a limited space over time. The model does not directly consider natural disturbances nor does it have representation of anthropogenic restoration and conservation activities such as coral seeding or cloud brightening.

  coralsreefecological-modelling

  Julia

  •

  MIT License

  •0•5•1•1•Updated Sep 10, 2024Sep 10, 2024

• toxval

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• bayesnec

  Public
  Bayesian No-Effect-Concentration estimation in R

  toxicologybayesian-inferenceecotoxicology+ 4concentration-responseno-effect-concentrationthreshold-derivationnon-linear-decay

  R

  •

  Other

  •6•11•18•2•Updated Sep 9, 2024Sep 9, 2024

• reefscan-data-model

  Public
  Python

  •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• reefscan_desktop_data_manager

  Public
  Python

  •0•0•2•0•Updated Aug 29, 2024Aug 29, 2024

• Upper-limits-of-coral-cover

  Public
  R

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• msPAF

  Public
  This repository contains code to replicate the methods for adjusting water quality guideline values for additive stressors, as derscribed in Negri, et al. 2019. Adjusting tropical marine water quality guideline values for elevated ocean temperatures. Environmental Science & Technology, 54(2), pp.1102-1110.

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• MADAME-api

  Public
  Julia API for the MADAME-app

  Julia

  •

  MIT License

  •0•1•0•0•Updated Aug 5, 2024Aug 5, 2024

• inshore_fish_temporal

  Public
  Analyses in support of inshore fish temporal trends

  R

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• MPA_zoning

  Public
  Analyses in support of MPA Zoning effects on fish

  R

  •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• dh_sediment_monitoring

  Public
  Codebase in support of the Darwin Harbour Sediment Monitoring Analysis app

  R

  •0•0•0•0•Updated Jul 20, 2024Jul 20, 2024

• ADRIA-synthetic-data

  Public
  Repository for the creation of synthetic input data layers for ADRIA.

  Python

  •

  MIT License

  •0•0•8•0•Updated Jul 11, 2024Jul 11, 2024

• 2022-Bleaching-central-GBR

  Public
  Bleaching severity of coral colonies in the central GBR during the 2022 mild bleaching event

  R

  •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

• ereefs-tutorials

  Public
  This repository contains the source scripts and rendered website files for the AIMS eReefs tutorials. The website is hosted via GitHub Pages.

  JavaScript

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• status

  Public
  R package for reporting analysis status

  R

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• imos-toolbox

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• Coral-recovery-manuscript

  Public
  Repository of code to reproduce analyses and Figures in Emslie et al (2024) "Increasing disturbance frequency undermines coral recovery"

  R

  •1•0•0•0•Updated May 29, 2024May 29, 2024