Open Problems in Single-Cell Analysis

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30 packages

data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/transform

432
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/kbet

340
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/graph_connectivity

339
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/cell_cycle_conservation

335
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/lisi

324
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_batch

322
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/pcr

322
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/asw_label

322
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_asw

300
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/clustering_overlap

296
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/isolated_label_f1

258
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/metrics/hvg_overlap

148
data_processors/process_dataset
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/data_processors/process_dataset

85
control_methods/shuffle_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration

52
methods/pyliger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/pyliger

52
control_methods/shuffle_integration_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_cell_type

52
methods/scanorama
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanorama

48
control_methods/shuffle_integration_by_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/shuffle_integration_by_batch

48
methods/liger
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/liger

41
control_methods/embed_cell_types_jittered
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/embed_cell_types_jittered

38
methods/mnnpy
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/mnnpy

38
control_methods/no_integration
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration

36
methods/bbknn
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/bbknn

34
methods/combat
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/combat

34
control_methods/embed_cell_types
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/embed_cell_types

34
methods/scvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scvi

34
methods/scalex
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scalex

33
control_methods/no_integration_batch
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/control_methods/no_integration_batch

32
methods/scanvi
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/scanvi

32
methods/batchelor_fastmnn
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_batch_integration/methods/batchelor_fastmnn

20