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    • Python
      MIT License
      1153Updated Feb 22, 2025Feb 22, 2025
    • Jupyter Notebook
      MIT License
      1510Updated Feb 21, 2025Feb 21, 2025
    • Python
      MIT License
      3462Updated Feb 21, 2025Feb 21, 2025
    • Benchmarking spatial simulators
      R
      MIT License
      0001Updated Feb 14, 2025Feb 14, 2025
    • Automated cell type annotation from rich, labeled reference data
      Python
      MIT License
      1012Updated Feb 11, 2025Feb 11, 2025
    • Formalizing and benchmarking open problems in single-cell genomics
      Shell
      MIT License
      8232791Updated Feb 10, 2025Feb 10, 2025
    • website

      Public
      Website hosted at https://openproblems.bio
      TeX
      Creative Commons Attribution 4.0 International
      743211Updated Feb 10, 2025Feb 10, 2025
    • Python
      MIT License
      1515Updated Feb 5, 2025Feb 5, 2025
    • docs

      Public
      TeX
      0141Updated Feb 4, 2025Feb 4, 2025
    • Shell
      MIT License
      0011Updated Jan 30, 2025Jan 30, 2025
    • A benchmark on predicting how small molecules change gene expression in different cell types.
      Python
      MIT License
      2851Updated Jan 28, 2025Jan 28, 2025
    • Python
      MIT License
      2152Updated Jan 27, 2025Jan 27, 2025
    • This repo contains common resources that can be used for OpenProblems v2 tasks.
      Nextflow
      MIT License
      1011Updated Jan 27, 2025Jan 27, 2025
    • Predicting the profiles of one modality (e.g. protein abundance) from another (e.g. mRNA expression).
      Python
      MIT License
      0101Updated Jan 13, 2025Jan 13, 2025
    • Removing noise in sparse single-cell RNA-sequencing count data
      Python
      MIT License
      1111Updated Dec 19, 2024Dec 19, 2024
    • R
      0100Updated Dec 19, 2024Dec 19, 2024
    • Formalizing and benchmarking open problems in single-cell genomics
      Python
      MIT License
      1956315Updated Dec 5, 2024Dec 5, 2024
    • Python
      0010Updated Nov 26, 2024Nov 26, 2024
    • core

      Public
      R
      MIT License
      0000Updated Nov 22, 2024Nov 22, 2024
    • A benchmark on detecting genes whose expression levels vary across spatial regions.
      Python
      MIT License
      0010Updated Nov 5, 2024Nov 5, 2024
    • task_template

      Public template
      This repo is a template to create a new task that has the correct files and structure needed to start a new task.
      Shell
      MIT License
      1100Updated Nov 5, 2024Nov 5, 2024
    • Predicting cell-cell interactions between source cell types and target cell types.
      Shell
      MIT License
      1000Updated Sep 26, 2024Sep 26, 2024
    • test

      Public
      Shell
      MIT License
      0000Updated Sep 11, 2024Sep 11, 2024
    • base_images

      Public archive
      MIT License
      0020Updated Sep 4, 2024Sep 4, 2024
    • datasets

      Public
      Jupyter Notebook
      MIT License
      0100Updated Jun 14, 2024Jun 14, 2024
    • Scripts associated with the 2023 Open Problems competition
      Jupyter Notebook
      MIT License
      01010Updated Nov 23, 2023Nov 23, 2023
    • Shell
      0200Updated Jun 6, 2023Jun 6, 2023
    • website-experimental

      Public archive
      Experimental website to try out new content for the main website
      TeX
      0304Updated Mar 10, 2023Mar 10, 2023
    • Nextflow
      MIT License
      0000Updated Feb 13, 2023Feb 13, 2023
    • Scripts and notebooks to reproduce the analysis of the NeurIPS 2021 competition paper submitted to PMLR
      Jupyter Notebook
      MIT License
      0000Updated Nov 28, 2022Nov 28, 2022
    35 repositories found. List is sorted by Last pushed in descending order.