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    9 repositories

    • pepsickle

      Public
      A context aware tool for proteasomal cleavage predictions
      Python
      •
      Other
      •2•10•0•0•Updated Jul 30, 2024Jul 30, 2024

    • neoepiscope

      Public
      predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
      Python
      •
      Other
      •17•26•5•0•Updated Sep 13, 2023Sep 13, 2023

    • intronomer

      Public
      Tool for calculating intron persistence, as defined in https://doi.org/10.1186/s13059-022-02789-6
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2023Feb 12, 2023

    • ri-tests

      Public
      Supporting materials for "Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads"
      R
      •
      MIT License
      •0•4•0•0•Updated Nov 3, 2022Nov 3, 2022

    • pepsickle-paper

      Public
      scripts for data pulls and analysis related to the pepsickle proteasomal cleavage paper
      Python
      •1•1•0•0•Updated Jul 28, 2022Jul 28, 2022

    • covid19

      Public
      covid19 exploration
      R
      •
      MIT License
      •4•9•1•0•Updated Apr 21, 2021Apr 21, 2021

    • immunorx_response_pipeline

      Public
      Python
      •
      MIT License
      •1•4•0•0•Updated Jan 28, 2020Jan 28, 2020

    • neoepiscope-paper

      Public
      Scripts for reproducing results from neoepiscope paper
      Python
      •
      MIT License
      •1•2•0•0•Updated Oct 8, 2019Oct 8, 2019

    • drylabyrinth.github.io

      Public
      Website for drylabyrinth, the ohsu computational forum
      HTML
      •
      Apache License 2.0
      •18•0•0•0•Updated Feb 7, 2019Feb 7, 2019