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    33 repositories

    • DTMicroscope

      Public
      Digital Twin Microscope
      Jupyter Notebook
      •
      MIT License
      •4•6•0•1•Updated Nov 26, 2024Nov 26, 2024

    • pyTEMlib

      Public
      TEM data quantification library through a model-based approach
      Jupyter Notebook
      •
      MIT License
      •9•17•3•0•Updated Nov 23, 2024Nov 23, 2024

    • BGlib

      Public
      Band Excitation and General Mode microscopy analytics software
      Jupyter Notebook
      •
      MIT License
      •5•3•8•1•Updated Nov 19, 2024Nov 19, 2024

    • pyAutoMic

      Public
      Jupyter Notebook
      •
      MIT License
      •0•6•1•0•Updated Oct 2, 2024Oct 2, 2024

    • SciFiReaders

      Public
      Tools for extracting data and metadata from scientific data files
      Jupyter Notebook
      •
      MIT License
      •13•13•16•0•Updated Sep 24, 2024Sep 24, 2024

    • sidpy

      Public
      Python utilities for storing, processing, and visualizing spectroscopic and imaging data
      Jupyter Notebook
      •
      MIT License
      •14•12•37•0•Updated Sep 20, 2024Sep 20, 2024

    • stemtool

      Public
      A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality
      electron-microscopyeels4d-stem
      Python
      •
      MIT License
      •3•18•4•0•Updated Jun 26, 2024Jun 26, 2024

    • atomai

      Public
      Deep and Machine Learning for Microscopy
      materialsjupyter-notebookensemble-learningelectron-microscopymaterials-sciencemicroscopyimagingsemantic-segmentationfully-convolutional-networksmultivariate-analysis
      Python
      •
      MIT License
      •41•196•8•3•Updated Jun 26, 2024Jun 26, 2024

    • pycroscopy

      Public
      Scientific analysis of nanoscale materials imaging data
      visualizationatommachine-learningstatisticsafmsignal-processingstmfftelectron-microscopystem
      Jupyter Notebook
      •
      MIT License
      •73•256•48•1•Updated Jun 7, 2024Jun 7, 2024

    • pyUSID

      Public
      Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)
      dataparallel-computinghdf5imagingspectroscopy
      Python
      •
      MIT License
      •18•25•16•1•Updated May 6, 2024May 6, 2024

    • SciFiDatasets

      Public
      Datasets for testing and demonstration purposes
      MIT License
      •3•0•0•0•Updated May 3, 2024May 3, 2024

    • pyNSID

      Public
      Utilities for facilitating the storage, access, and visualization of NSID data
      Jupyter Notebook
      •
      MIT License
      •3•3•6•0•Updated Feb 9, 2024Feb 9, 2024

    • ML_Summer_Course

      Public
      This is a repository setup for the Machine Learning in Microscopy Virtual Summer School
      Python
      •8•0•0•0•Updated Jul 2, 2023Jul 2, 2023

    • ferroschool

      Public
      FerroSchool Winter 2022 in Calgary
      Jupyter Notebook
      •0•0•0•0•Updated Dec 7, 2022Dec 7, 2022

    • scifireaders-feedstock

      Public
      A conda-smithy repository for scifireaders.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • pytemlib-feedstock

      Public
      A conda-smithy repository for pytemlib.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • sidpy-feedstock

      Public
      A conda-smithy repository for sidpy.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • pyusid-feedstock

      Public
      A conda-smithy repository for pyusid.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • pycroscopy-feedstock

      Public
      A conda-smithy repository for pycroscopy.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • MRS2021

      Public
      Notebooks for MRS2021 tutorial
      Jupyter Notebook
      •
      MIT License
      •2•4•0•0•Updated Nov 28, 2021Nov 28, 2021

    • SPM_ML_School_2021

      Public
      Virtual School – “Machine Learning and Automated Experiment in Scanning Probe Microscopy" at ORNL, October 4-7, 2021
      Jupyter Notebook
      •7•10•0•0•Updated Oct 7, 2021Oct 7, 2021

    • Intro_to_pycroscopy

      Public
      Introduction to the Pycroscopy Ecosystem
      Jupyter Notebook
      •0•3•0•0•Updated Aug 13, 2021Aug 13, 2021

    • USID

      Public
      Universal Spectroscopy and Imaging Data
      Jupyter Notebook
      •
      MIT License
      •1•0•3•0•Updated May 17, 2021May 17, 2021

    • AICrystallographer

      Public
      Here, we will upload our deep/machine learning models and 'workflows' (such as AtomNet, DefectNet, SymmetryNet, etc) that aid in automated analysis of atomically resolved images
      Jupyter Notebook
      •14•35•0•0•Updated May 7, 2021May 7, 2021

    • AISTEM_WORKSHOP_2020

      Public
      Materials for "AI for Atoms: How to Machine Learn STEM" Workshop
      Jupyter Notebook
      •4•18•0•0•Updated Dec 10, 2020Dec 10, 2020

    • CNMS_ML_in_MS_Workshop_2018

      Public
      CNMS User Meeting Workshop 2018: Machine learning in Materials Science with Python
      Jupyter Notebook
      •1•6•0•0•Updated Mar 4, 2020Mar 4, 2020

    • scalable_analytics

      Public
      Self-help guides for scalable data analytics
      pythondeep-learningvirtual-machinejupyter-notebookremotedata-analysis
      Shell
      •
      MIT License
      •4•2•0•0•Updated Oct 11, 2019Oct 11, 2019

    • CNMS_ML_in_MS_Workshop_2019

      Public
      Machine Learning in Materials Science: An Introduction through Python. Workshop as part of CNMS User Meeting 2019
      Jupyter Notebook
      •3•7•0•0•Updated Aug 14, 2019Aug 14, 2019

    • CNMS_UM_2018_SPIMA

      Public
      Introduction to Spectral and Image processing in Python
      notebooks
      Jupyter Notebook
      •
      MIT License
      •3•6•0•0•Updated Aug 9, 2019Aug 9, 2019

    • distUSID

      Public
      Development of distributed framework for USID processing
      frameworkparallel-computinghigh-performance-computingcloud-computingmpi4py
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Jun 10, 2019Jun 10, 2019