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    64 repositories

    • prego

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • iceqream

      Public
      R
      •
      Other
      •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • misha

      Public
      Genomic data analysis suite
      genomic-data-analysis
      C++
      •
      Other
      •1•4•3•0•Updated Nov 25, 2024Nov 25, 2024

    • blood_aging

      Public
      code companion for "A reference model for circulating hematopoietic stem cells with applications to diagnostics"
      Python
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • Daf.py

      Public
      Data in Axes in Formats
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • DataAxesFormats.jl

      Public
      Data in Axes in Formats
      Julia
      •
      MIT License
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • Metacells.jl

      Public
      Single-cell scRNA Analysis
      Julia
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • misha.ext

      Public
      A home for some function that extend the `misha` package.
      R
      •
      Other
      •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • MCView

      Public
      A shiny app for metacell analysis
      R
      •
      Other
      •3•8•5•0•Updated Sep 29, 2024Sep 29, 2024

    • naryn

      Public
      Native Access medical record Retriever for high Yield aNalytics
      data-analysismedical-records
      C++
      •
      Other
      •0•3•10•0•Updated Sep 29, 2024Sep 29, 2024

    • metacells

      Public
      Metacells - Single-cell RNA Sequencing Analysis
      Python
      •
      MIT License
      •8•97•13•0•Updated Sep 27, 2024Sep 27, 2024

    • tgstat

      Public
      Fast and efficient statistical tools from the Tanay lab
      statisticscorrelationknnalgorithms-implemented
      C++
      •2•8•0•0•Updated Sep 24, 2024Sep 24, 2024

    • MCGraphs.jl

      Public
      Generate graphs for visualizing scRNA-seq metacells data in a Daf data set.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

    • Gmara

      Public
      Genes Manifests Archive for RNA Analysis
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

    • tglkmeans

      Public
      Efficient Implementation of Kmeans++ Algorithm
      rkmeansalgorithms-implemented
      C++
      •
      Other
      •2•7•1•0•Updated Jun 26, 2024Jun 26, 2024

    • mcATAC

      Public
      Metacell analysis for ATAC data
      R
      •
      Other
      •0•1•3•1•Updated Jun 23, 2024Jun 23, 2024

    • mars_annotations

      Public
      R
      •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

    • EmbExe

      Public
      EXE development paper analysis code
      Jupyter Notebook
      •2•4•0•0•Updated May 22, 2024May 22, 2024

    • WiserTester

      Public
      Python
      •0•0•0•0•Updated May 12, 2024May 12, 2024

    • tgutil

      Public
      Tanay group collection of simple utility functions
      R
      •0•5•0•0•Updated Mar 14, 2024Mar 14, 2024

    • umi4cpackage

      Public
      Perl
      •
      Other
      •3•1•2•1•Updated Mar 6, 2024Mar 6, 2024

    • mldpEHR

      Public
      Markovian Lifelong Mortality and Disease Predisposition models for electronic health records.
      R
      •
      Other
      •0•1•0•1•Updated Mar 5, 2024Mar 5, 2024

    • NestedTests.jl

      Public
      Run tests in nested evironments.
      Julia
      •0•1•0•0•Updated Feb 13, 2024Feb 13, 2024

    • chameleon

      Public
      Automatic colors for multi-dimensional data
      R
      •
      Other
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • BarboyBercovich

      Public
      Pipeline and analysis of CD8+ Tcells timed response to immunotherapy in mouse models
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 21, 2023Nov 21, 2023

    • metacell.flow

      Public
      Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)
      R
      •1•2•0•0•Updated Nov 5, 2023Nov 5, 2023

    • metacell

      Public
      Metacell - Single-cell mRNA Analysis
      single-cell-rna-seq
      R
      •
      Other
      •30•109•29•0•Updated Oct 11, 2023Oct 11, 2023

    • Mendelson_et_al_2023

      Public
      Jupyter Notebook
      •0•3•0•0•Updated Oct 11, 2023Oct 11, 2023

    • labNorm

      Public
      Normalize Laboratory Measurements by Age and Gender
      R
      •
      Other
      •0•4•0•0•Updated Sep 18, 2023Sep 18, 2023

    • metacells-vignettes

      Public
      Vignettes for the Python metacells package
      Jupyter Notebook
      •1•3•2•0•Updated Sep 17, 2023Sep 17, 2023