Repositories list

• mattress

  Public
  Python interface to tatami representations

  matrixtatami

  Python

  •

  MIT License

  •0•0•1•0•Updated Dec 13, 2024Dec 13, 2024

• .github

  Public
  Miscellaneous organization meta-details

  MIT License

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• beachmat

  Public
  Clone of the Bioconductor repository for the beachmat package.

  matrix-librarybioconductor-packagehuman-cell-atlas

  C++

  •4•4•4•0•Updated Dec 6, 2024Dec 6, 2024

• developer-guide

  Public
  Developer guide for tatami libraries

  MIT License

  •0•1•0•0•Updated Dec 5, 2024Dec 5, 2024

• tatami_tiledb

  Public
  tatami bindings for TileDB-backed matrices

  C++

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

• tatami_layered

  Public
  Create layered tatami matrices for sparse positive counts

  C++

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

• eminem

  Public
  C++ parsers for Matrix Market files

  C++

  •

  MIT License

  •0•0•1•0•Updated Dec 1, 2024Dec 1, 2024

• tatami_mtx

  Public
  Matrix Market to tatami matrices

  C++

  •

  MIT License

  •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

• tatami_hdf5

  Public
  tatami bindings for HDF5 matrices

  C++

  •

  MIT License

  •0•0•1•0•Updated Dec 1, 2024Dec 1, 2024

• tatami_chunked

  Public
  Developer utilities for creating chunked matrix representations

  C++

  •

  MIT License

  •0•0•1•0•Updated Nov 30, 2024Nov 30, 2024

• tatami_test

  Public
  Test utilities for tatami libraries

  C++

  •

  MIT License

  •0•0•0•0•Updated Nov 30, 2024Nov 30, 2024

• tatami_stats

  Public
  Matrix statistics for tatami

  C++

  •

  MIT License

  •0•0•1•0•Updated Nov 27, 2024Nov 27, 2024

• tatami_mult

  Public
  Matrix multiplication for tatami

  C++

  •

  MIT License

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• tatami

  Public
  C++ API for various matrix types.

  cpp

  C++

  •

  MIT License

  •2•13•3•0•Updated Nov 25, 2024Nov 25, 2024

• gallery

  Public
  Gallery of tatami usage examples

  C++

  •

  MIT License

  •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• beachmat.tiledb

  Public
  Beachmat extensions for TileDB matrices

  R

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• beachmat.hdf5

  Public
  Beachmat extensions for HDF5 matrices

  R

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• tatami_r

  Public
  tatami bindings for abstract R matrices

  C++

  •

  MIT License

  •0•1•0•0•Updated Nov 3, 2024Nov 3, 2024

• test-blocked_running_stats

  Public
  Performance testing of blocked calculations of running statistics

  performance-testing

  C++

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• test-simple_simd_perf

  Public
  SIMD performance testing for delayed operations

  performance-testing

  C++

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• manticore

  Public
  C++ library for main thread execution

  C++

  •

  MIT License

  •0•1•0•0•Updated Aug 27, 2024Aug 27, 2024

• test-summation_speed

  Public
  Performance testing of summation strategies

  performance-testing

  C++

  •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• test-isometric_unary_sparse_expansion

  Public
  Performance testing of sparse expansion for isometric unary operations.

  performance-testing

  C++

  •0•0•0•0•Updated Mar 24, 2024Mar 24, 2024

• test-sparse_priority_queue

  Public
  Performance testing of a priority queue for sparse secondary extraction.

  performance-testing

  C++

  •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

• test-sparse_indexed_extraction

  Public
  Performance tests for sparse indexed extraction.

  performance-testing

  C++

  •0•0•0•0•Updated Mar 21, 2024Mar 21, 2024

• archive-beachmat

  Public archive
  An archived version of the beachmat repository, see https://github.com/LTLA/beachmat for the active version.

  rmatrixsingle-cell+ 1sparse-matrix

  C++

  •0•8•0•0•Updated Aug 15, 2017Aug 15, 2017