Repositories list

• pan-paedcancer-scrnaseq

  Public
  A repository for downloading, systematically processing data from Xiaohan's extensive database of GEO scRNA uploads and documenting the results

  Jupyter Notebook

  •0•0•0•0•Updated Dec 14, 2024Dec 14, 2024

• Nikita-project

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• dandelionR

  Public
  Single-cell immune repertoire trajectory analysis in R

  R

  •

  Other

  •1•6•0•0•Updated Dec 13, 2024Dec 13, 2024

• scRepertoire

  Public
  A toolkit for single-cell immune profiling

  R

  •

  MIT License

  •55•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• kttools

  Public
  Kelvin's python tool module

  Python

  •

  MIT License

  •3•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• ktbunya

  Public
  Simple scripts to help create an interactive session to run jupyter notebooks using UQ's Bunya compute.

  Python

  •

  MIT License

  •0•3•0•0•Updated Nov 11, 2024Nov 11, 2024

• scRNA_ASI_workshop

  Public
  ASI single-cell bonus workshop

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• SRR_database_extraction

  Public
  extraction of SRR database for training deep learning algorithm

  Shell

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• trust4-processing

  Public
  Shell

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• trust4applied

  Public
  zero gathering data using trust4

  Shell

  •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• scRNAseq-tutorial

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

• minigene_design

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Jun 30, 2024Jun 30, 2024

• tuonglab-site

  Public
  tuonglab-site

  TypeScript

  •1•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• turbogliph-run

  Public
  R

  •0•0•0•0•Updated May 9, 2024May 9, 2024

• Charlotte

  Public
  Jupyter Notebook

  •0•0•0•1•Updated Apr 26, 2024Apr 26, 2024

• tuong-group-onboarding

  Public template
  0•2•0•0•Updated Apr 22, 2024Apr 22, 2024

• Jaz_DPT

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

• asi_hackathon_data_preprocessing

  Public
  repository holding scripts and notebooks for data preprocessing

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jan 5, 2024Jan 5, 2024

• InezMara_Thymocytes

  Public
  Megan and Nicole's analysis of Inez and Mara's thymocyte dataset

  Jupyter Notebook

  •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

• Megan

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 9, 2023Oct 9, 2023

• Alicia-Project-1

  Public
  The Scanpy processing of cALL data

  Jupyter Notebook

  •0•0•0•0•Updated Sep 26, 2023Sep 26, 2023

• Nicole_notebooks

  Public
  Jupyter Notebook

  •0•0•0•1•Updated Sep 26, 2023Sep 26, 2023

• loxcode-barcoding

  Public
  0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• tuonglab_genesets

  Public
  0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

• Maloney1

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

• Sugnyan

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

• scanpy-tutorial

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

• tuong_group_basic_python

  Public template
  basic template repository for python classroom

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• code_questions

  Public archive
  Create an issue and we can help troubleshoot!

  0•0•0•0•Updated May 19, 2023May 19, 2023