Center for Translational Data Science

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213 repositories

gen3-code-vigil
Public
Gen3 Testing
Python
•
Apache License 2.0
•1•1•0•5•Updated Nov 20, 2024Nov 20, 2024
jupyter-superslim
Public
Super slim jupyter base image.
Shell
•
Apache License 2.0
•1•0•0•2•Updated Nov 20, 2024Nov 20, 2024
genomel_pipelines
Public
GenoMEL pipelines in Bionimbus
Python
•
Apache License 2.0
•1•1•0•78•Updated Nov 20, 2024Nov 20, 2024
WebAPI
Public
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
Java
•
Apache License 2.0
•169•0•0•12•Updated Nov 20, 2024Nov 20, 2024
gen3-frontend-framework
Public
A Frontend Framework for Gen3 data portals
TypeScript
•
Apache License 2.0
•4•2•0•13•Updated Nov 20, 2024Nov 20, 2024
covid19-tools
Public
HTML
•
Apache License 2.0
•4•3•0•54•Updated Nov 20, 2024Nov 20, 2024
data-portal
Public
Windmill: data portal for metadata submission and query
gen3
JavaScript
•
Apache License 2.0
•44•29•43•19•Updated Nov 20, 2024Nov 20, 2024
cdis-manifest
Public
Manifests tracking service versions to release to each environment
HTML
•
Apache License 2.0
•7•8•0•186•Updated Nov 20, 2024Nov 20, 2024
containers
Public
Jupyter Notebook
•
Apache License 2.0
•7•1•0•77•Updated Nov 19, 2024Nov 19, 2024
gitops-qa
Public
gen3-gitops
HTML
•
Apache License 2.0
•7•2•0•166•Updated Nov 19, 2024Nov 19, 2024
pelican
Public
Sower jobs for PFB export & import
gen3 gen3-pfb gen3-sower-job
Python
•
Apache License 2.0
•4•3•0•7•Updated Nov 19, 2024Nov 19, 2024
dictionaryutils
Public
python wrapper and metaschema for datadictionary
gen3
Python
•
Apache License 2.0
•7•4•4•8•Updated Nov 19, 2024Nov 19, 2024
hatchery
Public
hacktoberfest gen3
Go
•
Apache License 2.0
•4•7•0•9•Updated Nov 19, 2024Nov 19, 2024
cohort-middleware
Public
Middleware to work with Atlas cohorts in Gen3
vadc
Go
•
Apache License 2.0
•1•0•0•8•Updated Nov 19, 2024Nov 19, 2024
gen3-helm
Public
Helm charts for Gen3 Deployments
Smarty
•
Apache License 2.0
•23•9•5•14•Updated Nov 19, 2024Nov 19, 2024
dcf-dataservice
Public
Python
•
Apache License 2.0
•0•0•0•24•Updated Nov 19, 2024Nov 19, 2024
fence
Public
AuthN/AuthZ OIDC Service
gen3
Python
•
Apache License 2.0
•48•38•3•72•Updated Nov 19, 2024Nov 19, 2024
gen3.org
Public
The website for gen3.org
gen3
HTML
•
Apache License 2.0
•12•12•0•13•Updated Nov 19, 2024Nov 19, 2024
heal-data-commons
Public
TypeScript
•
Apache License 2.0
•0•0•0•6•Updated Nov 19, 2024Nov 19, 2024
argo-wrapper
Public
Wrapping Argo into nice API for VADC GWAS app
vadc
Python
•
Apache License 2.0
•3•3•0•5•Updated Nov 19, 2024Nov 19, 2024
cloud-automation
Public
Automation for standing up Gen3 commons
gen3
Shell
•
Apache License 2.0
•67•41•99•80•Updated Nov 19, 2024Nov 19, 2024
canine-data-commons
Public
Gen3.2 web portal for caninedc.org
Jupyter Notebook
•
Apache License 2.0
•0•0•0•2•Updated Nov 19, 2024Nov 19, 2024
Viewers
Public
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
TypeScript
•
MIT License
•3.4k•1•0•39•Updated Nov 19, 2024Nov 19, 2024
sheepdog
Public
API for herding data submissions
gen3
Python
•
Apache License 2.0
•17•11•22•17•Updated Nov 18, 2024Nov 18, 2024
heal-platform-sdk
Public
Python
•
Apache License 2.0
•0•1•0•4•Updated Nov 18, 2024Nov 18, 2024
pypfb
Public
Python library & CLI to create, view and edit PFB files
gen3-lib gen3-pfb pfb
Python
•
Apache License 2.0
•10•9•0•16•Updated Nov 18, 2024Nov 18, 2024
gen3sdk-python
Public
Gen3 SDK for Python
gen3-lib
Python
•
Apache License 2.0
•23•12•3•19•Updated Nov 18, 2024Nov 18, 2024
metadata-service
Public
The Metadata Service provides API for retrieving JSON metadata of GUIDs.
gen3
Python
•
Apache License 2.0
•10•15•1•6•Updated Nov 18, 2024Nov 18, 2024
indexd
Public
Index service server
gen3
Python
•
Apache License 2.0
•20•21•24•19•Updated Nov 18, 2024Nov 18, 2024
workspace-token-service
Public
gen3
Python
•
Apache License 2.0
•3•3•0•2•Updated Nov 18, 2024Nov 18, 2024