linting

fedeca/algorithms/torch_webdisco_algo.py

@@ -1,7 +1,6 @@
 """Implement webdisco algorithm with Torch."""
 import copy
 from copy import deepcopy
-from math import sqrt
 from pathlib import Path
 from typing import Any, List, Optional, Union
 
@@ -11,7 +10,6 @@
 from autograd import elementwise_grad
 from autograd import numpy as anp
 from lifelines.utils import StepSizer
-from pandas.api.types import is_numeric_dtype
 from scipy.linalg import norm
 from scipy.linalg import solve as spsolve
 from substrafl.algorithms.pytorch import weight_manager

fedeca/utils/survival_utils.py

@@ -1297,6 +1297,9 @@ def robust_sandwich_variance_pooled(
     model. The sandwich variance estimator is a robust estimator of the variance
     which accounts for the lack of dependence between the samples due to the
     introduction of weights for example.
+
+    Parameters
+    ----------
     X_norm : np.ndarray or torch.Tensor
         Input feature matrix of shape (n_samples, n_features).
     y : np.ndarray or torch.Tensor
@@ -1309,6 +1312,11 @@ def robust_sandwich_variance_pooled(
         Weights associated with each sample, with shape (n_samples,)
     scaled_variance_matrix : np.ndarray or torch.Tensor
         Classical scaled variance of the Cox model estimator.
+
+    Returns
+    -------
+    np.ndarray
+        The robust sandwich variance estimator.
     """
     n_samples, n_features = X_norm.shape
 
@@ -1357,8 +1365,7 @@ def robust_sandwich_variance_pooled(
 
 
 def km_curve(t, n, d, tmax=5000):
-    """Computes Kaplan-Meier (KM) curve based on unique event times, number of
-    individuals at risk and number of deaths.
+    """Compute Kaplan-Meier (KM) curve.
 
     This function is typically used in conjunction with
     `compute_events_statistics`. Note that the variance is computed
@@ -1482,8 +1489,7 @@ def compute_events_statistics(times, events):
 
 
 def aggregate_events_statistics(list_t_n_d):
-    """Aggregates (sums) events statistics from different centers, returning a single
-    tuple with the same format.
+    """Aggregate (sums) events statistics from different centers.
 
     Parameters
     ----------
@@ -1514,8 +1520,7 @@ def aggregate_events_statistics(list_t_n_d):
 
 
 def extend_events_to_common_grid(list_t_n_d, t_common):
-    """Extends a list of heterogeneous times, number of people at risk and number of
-    death on a common grid.
+    """Extend a list of heterogeneous times, number of people at risk on common grid.
 
     This method is an internal utility for `aggregate_events_statistics`.